Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,522,017 – 8,522,111 |
Length | 94 |
Max. P | 0.605575 |
Location | 8,522,017 – 8,522,111 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 68.01 |
Mean single sequence MFE | -30.75 |
Consensus MFE | -5.96 |
Energy contribution | -6.29 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.30 |
Structure conservation index | 0.19 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605575 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8522017 94 + 22224390 UUUUGGAAAAUUCCACACUGCGCAGCUCCAUG--ACGCUCUCGACCAAUCAGAAGUGUGGAUUCCAA---ACGCAAAACUACGCCCACACACAUAACGG .(((((((...(((((((((((((......))--.)))(((.((....)))))))))))))))))))---).((........))............... ( -23.70) >DroVir_CAF1 49097 87 + 1 UUUGUGGAGUGUGUGCGCA--UCAGCGAGCCGCAGCGC---CAGCCAAUGGCAGCUGUGGAUGCUAU---UGGCA----UACGCCCACACAGCGAAAGG ..(((((.((((((((.((--..((((..(((((((((---((.....)))).))))))).))))..---)))))----))))))))))...(....). ( -46.60) >DroSim_CAF1 66479 94 + 1 UUUUGGAAAUUUCCACACUGCGCAGCUCCAUG--GCGCUCUGGACCAAUCAGAAGUGUGGAUCCCAA---ACGCAAGACUACGCCCACACACAUAACGG .(((((.....((((((((((((.........--))))(((((.....)))))))))))))..))))---)(....)...................... ( -25.30) >DroEre_CAF1 69686 94 + 1 UUUUGGAAAUUUCUACACUGCGCAGCUCCAUG--GCGAUUUGCACGAAUCAGAAGUGUGGAUCGUAA---AAGGAAGACAACGCCCACACACAUAACAG ...((((....))))....(((..(((((...--((((((..(((.........)))..))))))..---..)).)).)..)))............... ( -20.90) >DroYak_CAF1 71999 94 + 1 UUUUGAAAAUUUCCACACUGCGCAGCUCCAUG--GCGAUUUGCACCAAUCAGUGGUGUGGAUCGUAA---AGGGAAGACAACGCCCACACACUUAACGG ...................(((..(((((...--((((((..(((((.....)))))..))))))..---..)).)).)..)))............... ( -25.90) >DroAna_CAF1 102203 92 + 1 UUUUGGAGA---CGCCGCUGCGCAGG-CCACC--ACAGUUU-AGCCAAUGGCAGCUGUGGACGCUAUCUUGUGGAUGGCAACGCCCACACAGCGUGCGG .........---((((((((.(..((-(..((--((((((.-.(((...)))))))))))..((((((.....))))))...)))..).))))).))). ( -42.10) >consensus UUUUGGAAAUUUCCACACUGCGCAGCUCCAUG__GCGCUUUGAACCAAUCAGAAGUGUGGAUCCUAA___ACGCAAGACAACGCCCACACACAUAACGG ......................................................((((((........................))))))......... ( -5.96 = -6.29 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:02 2006