Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,518,509 – 8,518,611 |
Length | 102 |
Max. P | 0.569241 |
Location | 8,518,509 – 8,518,611 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 73.98 |
Mean single sequence MFE | -25.08 |
Consensus MFE | -16.29 |
Energy contribution | -16.77 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.21 |
Mean z-score | -1.11 |
Structure conservation index | 0.65 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569241 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8518509 102 + 22224390 G-AA-----AAAAGGACUCGCAGAUGGCAAUUGAUUG-GCUUAGUGAUGCUCGAUCGAGAUGCCAUAAAUA----------UCACGCGGACAGGAAGUUGGCAAUAGCAUAGAAGGCAA .-..-----..........((..((((((.(((((((-((........)).)))))))..)))))).....----------....((.(((.....))).))....))........... ( -26.80) >DroSec_CAF1 59599 98 + 1 GGAA-----AAAAGGACUCGCAGAUGGCAAUUGAUUG-GCUUAGUGAUGCUCGAUCGAGAUGCCAUAAAUA----------UCACGCGGACCGGAAGUUGGCAAUAUCAUAGAA----- .((.-----..............((((((.(((((((-((........)).)))))))..)))))).....----------....((.((.(....))).))....))......----- ( -24.10) >DroSim_CAF1 63132 98 + 1 GGAA-----AAAAGGACUCGCAGAUGGCAAUUGAUUG-GCUUAGUGAUGCUCGAUCGAGAUGCCAUAAAUA----------UCACGCGGACCGGAAGUUGGCAAUAUCAUAGAA----- .((.-----..............((((((.(((((((-((........)).)))))))..)))))).....----------....((.((.(....))).))....))......----- ( -24.10) >DroEre_CAF1 66267 105 + 1 GGAA------AAAGGACUCGCAGAUGGCCAUUGAUUG-GCUUAGUGAUGCUCGAUCGAAAUCCCAUAAAUAUCAUGAAAUAUCAUGCGGACAGGAAGUUGGCAAGGGGAA-------UA ....------...(..(((((....(((((.....))-)))..)))).)..)........((((.........((((....))))((.(((.....))).))...)))).-------.. ( -24.40) >DroYak_CAF1 68488 104 + 1 GGAA----AAAAAGGACUCGCAGAUGGCAAUUGAUUG-GCUUAGUGAUGCUCGAUCGAGAAGCCAUAAAUA----------UCCUGCGGACAGGAAGUUGGCAAUAGGAAUCAAGGCUA ....----...........((..(((((..(((((((-((........)).)))))))...))))).....----------((((((.(((.....))).))...))))......)).. ( -27.30) >DroAna_CAF1 96644 109 + 1 GUAGGGGGGGAUAGAGUCUGCAGAUGGCGAAUGAUUUUUAUUCGUGAUGCCUGAUCAAAUGCCCAUAAAUA----------UUAUACGAGGGGGGCUUUUGAAAUAUUUUUAAUGCUUA .((((.(.((((...)))).)..((.((((((((...)))))))).)).)))).(((((.((((.......----------...........)))).)))))................. ( -23.77) >consensus GGAA_____AAAAGGACUCGCAGAUGGCAAUUGAUUG_GCUUAGUGAUGCUCGAUCGAGAUGCCAUAAAUA__________UCACGCGGACAGGAAGUUGGCAAUAGCAUAGAA___UA .......................(((((..(((((((.((........)).)))))))...)))))...................((.(((.....))).))................. (-16.29 = -16.77 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:58 2006