Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,492,075 – 8,492,171 |
Length | 96 |
Max. P | 0.992711 |
Location | 8,492,075 – 8,492,171 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 75.15 |
Mean single sequence MFE | -20.70 |
Consensus MFE | -6.46 |
Energy contribution | -7.30 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.07 |
Mean z-score | -1.83 |
Structure conservation index | 0.31 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712214 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8492075 96 + 22224390 AGUGUGAAGAUUUGACAAGUUUAAGAGGCAUUAAAAUCUAGCCUCCGACUAUGAACACUCACAGUUGC---AAUAUAUGUACAUAUG----UAUGUACAUAUG ........................(((((...........)))))(((((.(((....))).))))).---..(((((((((((...----.))))))))))) ( -22.70) >DroSec_CAF1 34237 90 + 1 AGUGUGAAGAUUUGACAAGUUUAACAGGCAUUAAAAUCUAGCCUCCGACUAUGUACACUCACAGUUGG---CAUCUAC--ACA--------UAUGUACAUAUG .(((((.((((..............((((...........))))((((((.((......)).))))))---.)))).)--)))--------)........... ( -19.00) >DroSim_CAF1 43356 90 + 1 AGUGUGAAGAUUUGACAAGUUUAAGAGGCAUUAAAAUCUAGCCUCCGACUAUGUACACUCACAGUUGG---CAUAUAC--ACA--------UAUGUACAUAUG .(((((..................(((((...........)))))(((((.((......)).)))))(---(((((..--..)--------))))).))))). ( -18.60) >DroEre_CAF1 40540 103 + 1 AGUGUGAAGAUUUGACAAGUUUAAGAGGCAUUAAAAUCUAGCCUCCAACUAUGAGUGUACAUAGUCGGAGGCAUAUACAUACAUAUGUACAUAUAUGUAUGUG .......((((((.....(((.....)))....)))))).((((((.((((((......)))))).))))))...((((((((((((....)))))))))))) ( -34.20) >DroAna_CAF1 56014 76 + 1 AGUGUGAAGAUUUGACAAGUUUAAGACGCAUUAAAAA--AGCCACCA----CUCGCACUCAC----------AUCUCU--AGA--------UAU-CGUCUAUG (((((((.....((.(...(((((......)))))..--.).))...----.)))))))...----------.....(--(((--------(..-.))))).. ( -9.00) >consensus AGUGUGAAGAUUUGACAAGUUUAAGAGGCAUUAAAAUCUAGCCUCCGACUAUGAACACUCACAGUUGG___CAUAUAC__ACA________UAUGUACAUAUG ..((((((((((.....)))))..(((((...........))))).............)))))........................................ ( -6.46 = -7.30 + 0.84)
Location | 8,492,075 – 8,492,171 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 75.15 |
Mean single sequence MFE | -22.44 |
Consensus MFE | -7.87 |
Energy contribution | -8.74 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.17 |
Mean z-score | -2.50 |
Structure conservation index | 0.35 |
SVM decision value | 2.35 |
SVM RNA-class probability | 0.992711 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8492075 96 - 22224390 CAUAUGUACAUA----CAUAUGUACAUAUAUU---GCAACUGUGAGUGUUCAUAGUCGGAGGCUAGAUUUUAAUGCCUCUUAAACUUGUCAAAUCUUCACACU .((((((((((.----...)))))))))).((---(((((((((......)))))).((((((...........))))))......)).)))........... ( -25.10) >DroSec_CAF1 34237 90 - 1 CAUAUGUACAUA--------UGU--GUAGAUG---CCAACUGUGAGUGUACAUAGUCGGAGGCUAGAUUUUAAUGCCUGUUAAACUUGUCAAAUCUUCACACU ............--------(((--(.((((.---((.((((((......)))))).))((((...........))))..............)))).)))).. ( -19.90) >DroSim_CAF1 43356 90 - 1 CAUAUGUACAUA--------UGU--GUAUAUG---CCAACUGUGAGUGUACAUAGUCGGAGGCUAGAUUUUAAUGCCUCUUAAACUUGUCAAAUCUUCACACU ..((((((((..--------..)--)))))))---.....((((((((.(((.(((.((((((...........))))))...))))))))....)))))).. ( -21.30) >DroEre_CAF1 40540 103 - 1 CACAUACAUAUAUGUACAUAUGUAUGUAUAUGCCUCCGACUAUGUACACUCAUAGUUGGAGGCUAGAUUUUAAUGCCUCUUAAACUUGUCAAAUCUUCACACU .((((((((((......))))))))))....(((((((((((((......)))))))))))))..((((((((......)))))...)))............. ( -33.60) >DroAna_CAF1 56014 76 - 1 CAUAGACG-AUA--------UCU--AGAGAU----------GUGAGUGCGAG----UGGUGGCU--UUUUUAAUGCGUCUUAAACUUGUCAAAUCUUCACACU ........-(((--------((.--...)))----------)).((((.(((----...((((.--..(((((......)))))...))))....))).)))) ( -12.30) >consensus CAUAUGUACAUA________UGU__GUAUAUG___CCAACUGUGAGUGUACAUAGUCGGAGGCUAGAUUUUAAUGCCUCUUAAACUUGUCAAAUCUUCACACU ......................................((((((......)))))).((((((...........))))))....................... ( -7.87 = -8.74 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:53 2006