Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,491,423 – 8,491,519 |
Length | 96 |
Max. P | 0.898293 |
Location | 8,491,423 – 8,491,519 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 84.91 |
Mean single sequence MFE | -26.52 |
Consensus MFE | -18.28 |
Energy contribution | -18.24 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.13 |
Mean z-score | -2.41 |
Structure conservation index | 0.69 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.898293 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8491423 96 + 22224390 AAAGAGG---------UGGCAGAUGAAAAAUGCAUUUCUCAGGCUCAUUUACAUUGAGCCGCGGCUACUGGAAUAUGC-UAUAUACAUAUGUAUGUAUGUACAUAC .....((---------((((.((.((((......)))))).((((((.......))))))...))))))....((((.-(((((((((....))))))))))))). ( -30.10) >DroSec_CAF1 33547 96 + 1 AAAGAGG---------UGGCAGAUGAAAAAUGCAUUUCUCAGGCUCAUUUACAUUGAGCCGCGGCUACUGGAAUAUGG-UAUAUACAGAUGUAUGUAUGUAUGUAC .....((---------((((.((.((((......)))))).((((((.......))))))...))))))........(-((((((((......))))))))).... ( -28.60) >DroSim_CAF1 42654 96 + 1 AAAGAGG---------UGGCAGAUGAAAAAUGCAUUUCUCAGGCUCAUUUACAUUGAGCCGCGGCUACUGGAAUAUGG-UAUAUACAGAUGUAUGUAUGUAUGUAC .....((---------((((.((.((((......)))))).((((((.......))))))...))))))........(-((((((((......))))))))).... ( -28.60) >DroEre_CAF1 39838 88 + 1 AAAGAGG---------UGGCAGAUGAAAAAUGCAUUUCUCAGGCUCAUUUACAUUGAGCCGCGGCUACUGGAAUAUGG-UAUACAUAUAUGUACAUGC-------- .....((---------((((.((.((((......)))))).((((((.......))))))...))))))...(((((.-....)))))..........-------- ( -23.40) >DroAna_CAF1 55043 100 + 1 AAAGAGACGGACGCACUGGCAGAUGAAAAAUGCAUUUCUCAGGCUCAUUUACAUUGAGCCGCAGCUACUGGAAUAUGAAUAUAUAUAUGCGUACAUAU------GC ........(.(((((.((((.((.((((......)))))).((((((.......))))))...)))).....(((((....))))).))))).)....------.. ( -21.90) >consensus AAAGAGG_________UGGCAGAUGAAAAAUGCAUUUCUCAGGCUCAUUUACAUUGAGCCGCGGCUACUGGAAUAUGG_UAUAUACAUAUGUAUGUAUGUA__UAC ................((((.((.((((......)))))).((((((.......))))))...))))............(((((((....)))))))......... (-18.28 = -18.24 + -0.04)
Location | 8,491,423 – 8,491,519 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 84.91 |
Mean single sequence MFE | -19.78 |
Consensus MFE | -17.68 |
Energy contribution | -16.88 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.17 |
Mean z-score | -1.52 |
Structure conservation index | 0.89 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654630 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8491423 96 - 22224390 GUAUGUACAUACAUACAUAUGUAUAUA-GCAUAUUCCAGUAGCCGCGGCUCAAUGUAAAUGAGCCUGAGAAAUGCAUUUUUCAUCUGCCA---------CCUCUUU ((((((....))))))((((((.....-))))))....((((....((((((.......))))))(((((((....))))))).))))..---------....... ( -23.20) >DroSec_CAF1 33547 96 - 1 GUACAUACAUACAUACAUCUGUAUAUA-CCAUAUUCCAGUAGCCGCGGCUCAAUGUAAAUGAGCCUGAGAAAUGCAUUUUUCAUCUGCCA---------CCUCUUU (((.(((((..........))))).))-).........((((....((((((.......))))))(((((((....))))))).))))..---------....... ( -17.90) >DroSim_CAF1 42654 96 - 1 GUACAUACAUACAUACAUCUGUAUAUA-CCAUAUUCCAGUAGCCGCGGCUCAAUGUAAAUGAGCCUGAGAAAUGCAUUUUUCAUCUGCCA---------CCUCUUU (((.(((((..........))))).))-).........((((....((((((.......))))))(((((((....))))))).))))..---------....... ( -17.90) >DroEre_CAF1 39838 88 - 1 --------GCAUGUACAUAUAUGUAUA-CCAUAUUCCAGUAGCCGCGGCUCAAUGUAAAUGAGCCUGAGAAAUGCAUUUUUCAUCUGCCA---------CCUCUUU --------((((((....))))))...-..........((((....((((((.......))))))(((((((....))))))).))))..---------....... ( -18.00) >DroAna_CAF1 55043 100 - 1 GC------AUAUGUACGCAUAUAUAUAUUCAUAUUCCAGUAGCUGCGGCUCAAUGUAAAUGAGCCUGAGAAAUGCAUUUUUCAUCUGCCAGUGCGUCCGUCUCUUU ..------..(((.((((((((((......))))....((((....((((((.......))))))(((((((....))))))).))))..)))))).)))...... ( -21.90) >consensus GUA__UACAUACAUACAUAUGUAUAUA_CCAUAUUCCAGUAGCCGCGGCUCAAUGUAAAUGAGCCUGAGAAAUGCAUUUUUCAUCUGCCA_________CCUCUUU ........((((((....))))))..............((((....((((((.......))))))(((((((....))))))).)))).................. (-17.68 = -16.88 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:51 2006