Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,491,246 – 8,491,336 |
Length | 90 |
Max. P | 0.779038 |
Location | 8,491,246 – 8,491,336 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 89.18 |
Mean single sequence MFE | -27.00 |
Consensus MFE | -20.23 |
Energy contribution | -19.47 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.19 |
Mean z-score | -2.70 |
Structure conservation index | 0.75 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779038 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8491246 90 + 22224390 UGGCUUUCUUUUGCAAUCAGCAAUUGGAAUCGGUAGUGUAUCGCUUUGGAAAACCAUCUUAGGAUGCACAAAUCGCAUUAGUAAGCCCAA .(((((.((..(((........((((....)))).(((((((.((.(((....)))....))))))))).....)))..)).)))))... ( -25.40) >DroSec_CAF1 33378 88 + 1 GGGCUUUCUUCCG--AUCAGCAAUUGAACUCGGUAGUGCAUCACUUUGGAAAAGCAUCUUAGGAUGCACAAACCGCAUUAGUAAGCCCAA ((((((.((.(((--(((((...))))..))))..(((((((.((..(((......))).)))))))))..........)).)))))).. ( -28.30) >DroSim_CAF1 42485 88 + 1 AAGCUUUCUUCUG--AUCAGCAAUUGGACUCGGUAGUGCAUCACUUUGGAAAAGCAUCUUGGGAUGCACAAACCGCAUUAGUGAGCCCAA ..(((.((....)--)..)))..((((.((((.((((((.((......))...(((((....))))).......)))))).)))).)))) ( -27.30) >consensus AGGCUUUCUUCUG__AUCAGCAAUUGGACUCGGUAGUGCAUCACUUUGGAAAAGCAUCUUAGGAUGCACAAACCGCAUUAGUAAGCCCAA .(((((.((.......((((...))))...((((.(((((((.((..(((......))).)))))))))..))))....)).)))))... (-20.23 = -19.47 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:49 2006