Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,488,694 – 8,488,796 |
Length | 102 |
Max. P | 0.924128 |
Location | 8,488,694 – 8,488,796 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 79.94 |
Mean single sequence MFE | -40.88 |
Consensus MFE | -25.29 |
Energy contribution | -25.57 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.17 |
Mean z-score | -2.22 |
Structure conservation index | 0.62 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.924128 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8488694 102 - 22224390 AAACCGCAAGAUAAGCCCGAAUGCGACUUCGUAUCGGUGUUCGGGUUUUGGGAUUCGGGAUCU--CGCUACUCGGGAU------CUCGAAAUCUCGGGAUUCGGG-UCCCC ....(....)..((((((((((((((.......)).)))))))))))).((((((((((((((--((.....))))))------)))).))))))(((((....)-)))). ( -43.50) >DroSec_CAF1 30959 94 - 1 AAACCGCAAGAUAAGCCCGAAUGCGACUUCGUAUCGGUGUUCGGGUCUUGGGAUUCGGGAUCU--CGG-------GA-------CUCGGGAUCUCGGGAUUCGGG-UCCCC ...((.((((((.(((((((.((((....)))))))).)))...))))))))....(((((((--((.-------..-------..)))))))))(((((....)-)))). ( -40.30) >DroSim_CAF1 40115 94 - 1 AAACCGCAAGAUAAGCCCGAAUGCGACUUCGUAUCGGUGCUCGGGUCUUGGGAUUCGGGAUCU--CGG-------GAU------CUCGGGA-CUCGGGAUUCGGG-UCCCC ...((.((((((.(((((((.((((....)))))))).)))...))))))))....((((((.--...-------)))------)))((((-((((.....))))-)))). ( -44.70) >DroEre_CAF1 37058 105 - 1 AAACCGCAAGAUAAGCCCGAAUGCGACUUCGUAUCGGUGUUCGGGUUUUGGGAUUCGGGCUUCGGCGGGACUCGGGAUC------UCGGGAUCUCGGGACUCGGAACCCUG ....(....)...(((((((.((((....)))))))).))).((((((((((..((..((....))..))(((((((((------....))))))))).)))))))))).. ( -44.00) >DroYak_CAF1 38247 101 - 1 AAACCGCUAGAUAAGCCCGACUGCGACUUCGUAUCGGUGUUCGGGUUUUCGGUUUU---------UGGGAUUCGGGAUCUUGGACUCGGAAUCUUGGGAUUCGGG-UGCUC .............(((((((.((((....)))))))).))).((((.((((..(((---------..((((((.(..((...))..).))))))..)))..))))-.)))) ( -31.90) >consensus AAACCGCAAGAUAAGCCCGAAUGCGACUUCGUAUCGGUGUUCGGGUUUUGGGAUUCGGGAUCU__CGG_A_UCGGGAU______CUCGGGAUCUCGGGAUUCGGG_UCCCC ...((........(((((((.((((....)))))))).))).((((((((((((((.((..........................)).))))))))))))))))....... (-25.29 = -25.57 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:48 2006