Locus 3206

Sequence ID	X_DroMel_CAF1
Location	8,487,187 – 8,487,291
Length	104
Max. P	0.572065

overview

Window 9

Location	8,487,187 – 8,487,291
Length	104
Sequences	4
Columns	116
Reading direction	reverse
Mean pairwise identity	81.06
Mean single sequence MFE	-15.70
Consensus MFE	-8.85
Energy contribution	-9.22
Covariance contribution	0.37
Combinations/Pair	1.08
Mean z-score	-2.04
Structure conservation index	0.56
SVM decision value	0.08
SVM RNA-class probability	0.572065
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8487187 104 - 22224390
---UCCCUCGGUGACGCUGCAAAUGAC-------AAACAAAAACCUGACAAAAAUCACAAAAAAUUGGCUACAAAAUGCCAACAAAAGACUCUCUGU--CCAAGCGGCACACACAA
---......(....)(((((.......-------..............................(((((........))))).....(((.....))--)...)))))........ ( -19.80)
>DroPse_CAF1 35502 115 - 1
UUCUCAUUCGGUGACGCUGCAAAUGACACAACACAAAAAA-AACCUGACCAAAAUCACAAAAAAUUGGCUACAAAACGCCAACAAAAGACUCUGUGGCCCCACACUCCCCCCACAA
..........(((..((..((...................-....(((......))).......(((((........)))))..........))..))..)))............. ( -14.90)
>DroAna_CAF1 49475 95 - 1
---UCGUUCGGUGACGCUGCAAAUGAC-------AAACAA-AACCUGACAAAAAUCACAAAAAAUUGGCUACAAAAUGCCAACAAAAGACUCU----------GCCACACAGACAU
---..((.((....))..)).......-------......-.......................(((((........)))))........(((----------(.....))))... ( -13.20)
>DroPer_CAF1 38081 115 - 1
UUCUCAUUCGGUGACGCUGCAAAUGACACAACACAAAAAA-AACCUGACCAAAAUCACAAAAAAUUGGCUACAAAACGCCAACAAAAGACUCUGUGGCCCCACACUCCCCCCACAA
..........(((..((..((...................-....(((......))).......(((((........)))))..........))..))..)))............. ( -14.90)
>consensus
___UCAUUCGGUGACGCUGCAAAUGAC_______AAAAAA_AACCUGACAAAAAUCACAAAAAAUUGGCUACAAAACGCCAACAAAAGACUCUGUGG__CCACACUCCACACACAA
...(((((((....)).....)))))......................................(((((........))))).................................. ( -8.85 =  -9.22 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:45 2006