Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,482,122 – 8,482,223 |
Length | 101 |
Max. P | 0.747525 |
Location | 8,482,122 – 8,482,223 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 79.07 |
Mean single sequence MFE | -16.54 |
Consensus MFE | -9.76 |
Energy contribution | -11.08 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.11 |
Mean z-score | -1.90 |
Structure conservation index | 0.59 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747525 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8482122 101 - 22224390 AGCCAGCAGCGGCAGAAACAUCCCAAUCCCAAU------CCCAAUCCCAGCCAGGCAAGCAGGCACCCCUAAUAAUAAUAACCCCUCUGCAGCUCCUGUGCACUAAA .(((((.(((.(((((.................------..........((.......))(((....)))...............))))).))).))).))...... ( -20.20) >DroSec_CAF1 24518 85 - 1 AGCCAGCAGCGGCAGAAACAUCCCA------------------AUCCCAGCCAGC----CAGGCACCCCUAAUAAUAAUAACCCCUCUGCAGCUCCUGUGCACUAAA .(((((.(((.(((((.........------------------......(((...----..)))........((....)).....))))).))).))).))...... ( -19.90) >DroSim_CAF1 33712 91 - 1 AGCCAGCAGCGGCAGAAACAUCCCAAUCCCA------------AUCCCAGCCAGC----CAGGCACCCCUAAUAAUAAUAACCCCUCUGCAGCUCCUGUGCACUAAA .(((((.(((.(((((...............------------......(((...----..)))........((....)).....))))).))).))).))...... ( -19.90) >DroEre_CAF1 30616 100 - 1 AACCAGUAGCAGCAGCACCACCACCACCAGAAA---CAUCCCAAUCCCAGCCAGG----CACAAUCCCCUAAUAAUAAUAACCGCUCUGCAGAUCCUGUGCACCAAA ........((((.(((.............((..---..))............(((----........))).............)))))))................. ( -10.10) >DroYak_CAF1 31414 103 - 1 AACCAGCAGCAGCAGAAACAUCCCAAUCCCAAUUCCAAUUCCAAUCCUAGUCAGG----CAGGCACCCCUAAUAUUAGUAACCCCUCUGCCGAUCCUGUGCACUAAA .....(((.(((..((....))...........................(((.((----((((.....(((....))).......))))))))).))))))...... ( -12.60) >consensus AGCCAGCAGCGGCAGAAACAUCCCAAUCCCAA________CCAAUCCCAGCCAGG____CAGGCACCCCUAAUAAUAAUAACCCCUCUGCAGCUCCUGUGCACUAAA .(((((.(((.(((((.................................(((.........))).......((....))......))))).))).))).))...... ( -9.76 = -11.08 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:43 2006