Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,481,851 – 8,481,949 |
Length | 98 |
Max. P | 0.607732 |
Location | 8,481,851 – 8,481,949 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 73.39 |
Mean single sequence MFE | -15.75 |
Consensus MFE | -6.62 |
Energy contribution | -6.63 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.32 |
Structure conservation index | 0.42 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.607732 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8481851 98 - 22224390 UUAGAUUGCAAUCAUACUAUAUCUCUGAGAGAUCAUACUAUAUCUCUGAUAGAUCCUAUAUUUAUAAUGGAAUUUUUUCCAUGGUGU---AGCCUACCCCU .(((..((((.((((.....((((.(.((((((........)))))).).))))..............((((....)))))))))))---)..)))..... ( -19.40) >DroSec_CAF1 24263 83 - 1 UUAGAU------CA-----------UACUAUAUCAUACUAUAUCUCUGAUAGAUCCUAUAUUUAUAAUGGACU-UUUUCCAUGGUGUAGUAGCCUACCCCU .(((..------..-----------(((((((((((.((((.......))))................(((..-...))))))))))))))..)))..... ( -15.10) >DroSim_CAF1 33468 92 - 1 UUAGAU------CA--CUAUAUCACUACUAUAUCAUACCAUAUCUCUGAUAGAUCCUAUAUUCAUAAUGGACU-UUUUCCAUGGUGUAGUAGCCUACCCCU ......------..--........((((((((((((.....((((.....))))..............(((..-...)))))))))))))))......... ( -16.10) >DroEre_CAF1 30354 75 - 1 UUU---------CA---UAUAGCAC--CUAUAG-------CAUCUCCGAUAGACUCUAGAUUUCUAAUGGACU-UUUUCCAUGGUGU---AGCCUACC-CU ...---------..---....((((--(..(((-------..(((.....)))..)))........(((((..-...))))))))))---........-.. ( -12.40) >consensus UUAGAU______CA___UAUAUCACUACUAUAUCAUACUAUAUCUCUGAUAGAUCCUAUAUUUAUAAUGGACU_UUUUCCAUGGUGU___AGCCUACCCCU ..................................................................(((((......)))))(((......)))....... ( -6.62 = -6.63 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:42 2006