Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,471,496 – 8,471,614 |
Length | 118 |
Max. P | 0.948827 |
Location | 8,471,496 – 8,471,614 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 95.76 |
Mean single sequence MFE | -25.66 |
Consensus MFE | -23.58 |
Energy contribution | -22.82 |
Covariance contribution | -0.76 |
Combinations/Pair | 1.17 |
Mean z-score | -1.51 |
Structure conservation index | 0.92 |
SVM decision value | 1.39 |
SVM RNA-class probability | 0.948827 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8471496 118 - 22224390 AAUUUGAUUAAUUAGUAUGAAAAAUGUUUUGAAAAAUACCCAUUUAAUGCGCAAGCGAGAUGGCAGCACAAAAAUACGAUGAUUCCGAAUACGUUUGGCUGCUAUUUAGUACAUAUAU ..............(((((..(((((..((....))....)))))..(((....)))((((((((((.((((.((.((.......)).))...))))))))))))))....))))).. ( -24.80) >DroSec_CAF1 14239 118 - 1 AAUUUGAUUAAUUAGUAUGAAAAAUGUUUUGAAAAAUACCCAUUUAAUGCGCAAGCGAGAUGGCAGCACCAAAAUACGACGAUUCCGAGUUCGUUUGGCUGCUAUUUAGUACAUAUAU .......................((((.(((((......((((((...((....)).)))))).(((((((((..((..((....)).))...))))).)))).))))).)))).... ( -24.90) >DroSim_CAF1 23314 118 - 1 AAUUUGAUUAAUUAGUAUGAAAAAUGUUUUGAAAAAUACCCAUUUAAUGCGCAAGCGAGAUGGCAGCACCAAAAUACGACGAUUCCGAGUUCGUUUGGCUGCUAUUUAGUACAUAUAU .......................((((.(((((......((((((...((....)).)))))).(((((((((..((..((....)).))...))))).)))).))))).)))).... ( -24.90) >DroEre_CAF1 20295 118 - 1 AAUUUGAUUAAUUAGUAUGAAAAAUGUUUUGAAAAAUACCCAUUUAAUGUGCAAGCGAGAUGGCAGCACAGAAAUACGACGAUUCCGAAUUCGUUGGGCUGCUAUUUAGUAUAUACAU ..............(((((..(((((..((....))....))))).........((.((((((((((..(....).((((((........)))))).)))))))))).)).))))).. ( -25.30) >DroYak_CAF1 20960 118 - 1 AAUUUGAUUAAUUAGUAUGAAAAAUGUUUUGAAAAAUACCCAUUUAAUGCGCAAGCGAGAUGGCAGCACAAAAAUACGACGAUUCCGAAUUCGUUGGGCUGCUAUUUAGUAUAUGCAU ..............(((((..(((((..((....))....)))))..(((....)))((((((((((.........((((((........)))))).))))))))))....))))).. ( -28.40) >consensus AAUUUGAUUAAUUAGUAUGAAAAAUGUUUUGAAAAAUACCCAUUUAAUGCGCAAGCGAGAUGGCAGCACAAAAAUACGACGAUUCCGAAUUCGUUUGGCUGCUAUUUAGUACAUAUAU ..............(((((..(((((..((....))....)))))..(((....)))((((((((((..........(((((........)))))..))))))))))....))))).. (-23.58 = -22.82 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:37 2006