Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,464,880 – 8,465,079 |
Length | 199 |
Max. P | 0.595392 |
Location | 8,464,880 – 8,464,988 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 80.31 |
Mean single sequence MFE | -26.46 |
Consensus MFE | -17.34 |
Energy contribution | -17.98 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.11 |
Mean z-score | -1.63 |
Structure conservation index | 0.66 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569305 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8464880 108 - 22224390 AUCAAAAUCAAAAUCGUGGCAUCCAUUGUGUUGAUGUUUUGUGUGCUGCCGAUGGCGACACCAUCGAUAUACAA--------UAUAUAUAUAUUGCCAAGAUCAUCUUUGCGU-CCA ............(((.(((((.....((((((((((((.((.(((.((((...)))).)))))..))))).)))--------)))).......))))).)))...........-... ( -24.70) >DroSec_CAF1 7674 101 - 1 AUC------AAAAUCGUGGCAUCCAUUGUGUUGAUGUUUUGUGUGCUGCCAAUGGCGACACCAUCGAUAUA---------UAUGUAUAUAUAUUGCCAAGAUCAUCUUUGGGU-CCA ...------.......(((.(((((..(...((((.((.((.(((.((((...)))).))))).(((((((---------((....)))))))))..)).)))).)..)))))-))) ( -24.70) >DroSim_CAF1 16444 110 - 1 AUC------AAAAUCGUGGCAUCCAUUGUGUUGAUGUUUUGUGUGCUGCCGAUGGCGACACCAUCGAUAUAUGAUGUAUAUACAUAUAUAUAUUGCCAAGAUCAUCUUUGGGU-CCA .((------((((((.((((......((((((((((....(((((((......))).)))))))))))))).(((((((((....))))))))))))).)))....)))))..-... ( -30.00) >DroYak_CAF1 14314 99 - 1 AUC------AAAAUCGUGGCAUCCAUUGUGUUGCUGUUUUGUGUGCUGCCGAUGGCGACACCAUCGAUAUA---------UACAUA--UAUAUUGCCGAGAUCAUCUUUGGGU-CCA ...------.......(((.(((((..(((((((((((..((.....)).)))))))))))...(((((((---------(....)--))))))).............)))))-))) ( -24.20) >DroAna_CAF1 23667 107 - 1 -UU-------UUCUGAUGGCAUCCUUUGUUUUGAUAUUUUGUGUGCUGCCGAUGGCGACACCAUCGAUAUAUUCGAUAUAUACA--CACACAUUCCAGGGAUCAUUUUUUGGUCCCA -..-------.((....((((.....))))..)).....((((((.((.((((((.....))))))((((((...)))))).))--)))))).....(((((((.....))))))). ( -28.70) >consensus AUC______AAAAUCGUGGCAUCCAUUGUGUUGAUGUUUUGUGUGCUGCCGAUGGCGACACCAUCGAUAUA_________UACAUAUAUAUAUUGCCAAGAUCAUCUUUGGGU_CCA ................(((.(((((.((((((((((....(((((((......))).))))))))))))))..........................(((.....)))))))).))) (-17.34 = -17.98 + 0.64)
Location | 8,464,988 – 8,465,079 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 80.21 |
Mean single sequence MFE | -18.75 |
Consensus MFE | -13.30 |
Energy contribution | -13.30 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 0.71 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.595392 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8464988 91 - 22224390 GAUCGGCUUUCAGAUGGACAAAAACAAAAAAAAAAAAAAGUGCACUCAAAAAGGAGGAC------UCCGAACUCAUCUGUUCCUCCCCGAAAUC------GAA ..((((.((((.((((.((....................)).)).)).....((((((.------.(.((.....)).).))))))..))))))------)). ( -16.35) >DroEre_CAF1 14348 83 - 1 GAUCGGCUUUCAGAUGGACAAAA--------------AAGUGCACUCAAAAAGGAGGAC------UCCGAACUCAUCUGUUCCUCCCCGAAAUCGAAAUCGAA ..((((......((((.((....--------------..)).)).)).....((((((.------.(.((.....)).).))))))))))..(((....))). ( -18.80) >DroYak_CAF1 14413 83 - 1 GAUCGGCUUUCAGAUGGACAAAA--------------AAGUGCACUCAAAGAGGAGGACCUCGCAUCUGAACUCAUCUGUUCCUCCCCGAAAUC------GAA ..((((((((.((.((.((....--------------..)).)))).)))).((((((....(((..((....))..)))))))))))))....------... ( -21.10) >consensus GAUCGGCUUUCAGAUGGACAAAA______________AAGUGCACUCAAAAAGGAGGAC______UCCGAACUCAUCUGUUCCUCCCCGAAAUC______GAA ..((((......((((.((....................)).)).)).....((((((......................))))))))))............. (-13.30 = -13.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:25 2006