| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,464,244 – 8,464,337 |
| Length | 93 |
| Max. P | 0.881572 |
| Location | 8,464,244 – 8,464,337 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 78.60 |
| Mean single sequence MFE | -35.05 |
| Consensus MFE | -19.30 |
| Energy contribution | -20.14 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.881572 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8464244 93 - 22224390 AAACUAAGACUCCAAUUAGCCUGGCUCUUCAGCUCUGCCCACCGAGGCUCAUUAU------------------AUAGUAGGUGGGUUUCGGUUCCGGCAGAGGAGUAUUUG ........(((((.....((.(((....)))))((((((.(((((((((((((..------------------......)))))))))))))...)))))))))))..... ( -35.90) >DroSec_CAF1 7131 93 - 1 AAACUAAGACUCCAAUUAGCCUGGCUCUUCAGCUCUGCCCACCGUUGCUCAUUAU------------------AUGGGAGGUGGGUUUCGGUUCCGGCGGAGGAGUAUUUG ........(((((.....((.(((....)))))((((((.((((..(((((((..------------------......)))))))..))))...)))))))))))..... ( -31.40) >DroSim_CAF1 15897 82 - 1 AAACUAAGACUCCAAUUAGCCUGGCUCUUCAGCUCUGCCCACCGUUGCUCAUUAU------------------AUGGGAGGUGGGUUUCGGUUCCGGCGU----------- ..................(((.((......((((..(((((((....(((((...------------------))))).)))))))...)))))))))..----------- ( -24.00) >DroEre_CAF1 13634 93 - 1 AAACUAAGACUCCAAUCAGCCUGGCUCUUCAGCUCUGCCCACCGAGGCUCAUUAU------------------AUAGGAGGUGGGUCUCGGUUCCGGCGGAGGAGUAUUUG ........(((((.....((.(((....)))))((((((.(((((((((((((..------------------......)))))))))))))...)))))))))))..... ( -37.70) >DroYak_CAF1 13662 95 - 1 AAACUAAGACUCCAAUUAGCCUGGCUCUUCAGCUCUGCCCACCGAGGCUCAUUAUA----------------UAUAGGAGGUGGGUUUCGGUGCCGGCGGAGGAGUACUUG ....(((((((((.....((.(((....)))))((((((((((((((((((((...----------------.......))))))))))))))..))))))))))).)))) ( -38.60) >DroAna_CAF1 22625 102 - 1 AAACUAAGACUCCAAUUAGCUUGGCUCCUCAGCUCCGCCCACCGC--CUUAUUAGGGGGCGGUGCUCCAGUCAGUGGGCAGAGGGUCUGGGUCCAGGGGGG-GUG------ ........(((((..((.(((..(..(((((((.((((((.((..--.......)))))))).)))...(((....))).))))..)..)))..))..)))-)).------ ( -42.70) >consensus AAACUAAGACUCCAAUUAGCCUGGCUCUUCAGCUCUGCCCACCGAGGCUCAUUAU__________________AUAGGAGGUGGGUUUCGGUUCCGGCGGAGGAGUAUUUG ...((((((..(((.......))).)))).))(((((((.((((..(((((((..........................)))))))..))))...)))))))......... (-19.30 = -20.14 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:24 2006