Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,451,227 – 8,451,320 |
Length | 93 |
Max. P | 0.711330 |
Location | 8,451,227 – 8,451,320 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 82.56 |
Mean single sequence MFE | -30.08 |
Consensus MFE | -24.41 |
Energy contribution | -25.10 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.14 |
Mean z-score | -1.64 |
Structure conservation index | 0.81 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.711330 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8451227 93 - 22224390 GCAGACGCGUUUGCCCUUUAAGUUAUUAACGCCAGGCGGUGGGGCGGUGCCCACAUCCUC---CU---CCUCCUCAUCGUCCCCCGCCACUAUCGGCUC ((.((.(((((.((.......))....)))))..(((((.(((((((((...........---..---......))))))))))))))....)).)).. ( -31.71) >DroSim_CAF1 4001 96 - 1 GCAGACGCGUUUGCCCUUUAAGUUAAUAACGCCUGGCGGUGGGGCGGGGCCCACAUCCUC---CUCCUCCUCCUCAUCGUCCCCCGCCACCACCGGCUC .(((..(((((.((.......))....)))))))).(((((((((((((..(........---...............)..))))))).)))))).... ( -33.50) >DroEre_CAF1 2043 90 - 1 GCAGACGCGUCUGCCCUUCAAAUUAUUAACGCCGGGCGGUGGGCCGGUAUCCACA---------UCCUCGUCCUCCUCGUCUCCCGCCACCACUGGCUC (((((....)))))................(((.((.((((((.(((.....((.---------.....)).....)))...)))))).))...))).. ( -26.40) >DroYak_CAF1 993 99 - 1 GCAGACGCGUCUGCCCUUCAAGUUAUUAACGCCAGGCGGUGGAUCGGCAUCCACAGCCACCACCUCUUCCUCCUCAUCGUCUCCCGCCACCACUGGCUC (((((....)))))................(((((..(((((...(((.......)))...................((.....))))))).))))).. ( -28.70) >consensus GCAGACGCGUCUGCCCUUCAAGUUAUUAACGCCAGGCGGUGGGGCGGUACCCACAUCCUC___CUCCUCCUCCUCAUCGUCCCCCGCCACCACCGGCUC (((((....)))))................(((((((((.(((((((.............................)))))))))))).....)))).. (-24.41 = -25.10 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:15 2006