Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,449,472 – 8,449,564 |
Length | 92 |
Max. P | 0.839608 |
Location | 8,449,472 – 8,449,564 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 77.33 |
Mean single sequence MFE | -31.94 |
Consensus MFE | -18.71 |
Energy contribution | -19.97 |
Covariance contribution | 1.26 |
Combinations/Pair | 1.32 |
Mean z-score | -1.84 |
Structure conservation index | 0.59 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.839608 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8449472 92 - 22224390 ----GGCAGCGGAUCCAACAACACAUCCUACCUGGAGCACGAGCAAAGCAGCUGCGACAGCUCCAAGGCCAGCAGCCAAACGCUGGCCUUUCGACC ----((...((((...................((((((.(((((......))).))...))))))((((((((........)))))))))))).)) ( -31.70) >DroPse_CAF1 13152 90 - 1 CACAGGCGACGCCUCCGCCGCCACG------CUGGAGCAGGAGCAUACCAGCUGCGAAAGCACCAAAAUGAGCUGCCAGUCGCUGGCCUUCCGUCC ....((((.......))))((((((------(((((((...(((......)))((....))..........))).)))).)).))))......... ( -32.70) >DroGri_CAF1 69160 96 - 1 CAAUGGCAACGGCAACGGCAACUCCGGCUGCCUGGAGCACGAGCAGAACAGCAGUGACAGCAGUGGUUGUGGCAGCCAAAUGCUCGCUUUUCGUCC ....(((...((((.(((.....)))..)))).((((..((((((.....((.((.(((((....))))).)).))....))))))..))))))). ( -33.50) >DroSec_CAF1 16965 92 - 1 ----GGCAGCGGAUCCAACAACACAUUCUACCUGGAGCACGAGCAAAGCAGCUGCGACAGCUCCAAGGCCAGCAGCCAAACGCUGGCCUUUCGACC ----((...((((...................((((((.(((((......))).))...))))))((((((((........)))))))))))).)) ( -31.70) >DroSim_CAF1 7569 92 - 1 ----GGCAGCGGAUCCAACAACACAUCCUACCUGGAGCACGAGCAAAGCAGCUGCGACAGCUCCAAGGCCAGCAGCCAAACGUUGGCCUUUCGACC ----((...((((...................((((((.(((((......))).))...))))))((((((((........)))))))))))).)) ( -29.30) >DroYak_CAF1 11190 92 - 1 ----GGCAGCGGUUCCAACAACACAUCCUGCCUGGAGCACGAACAAAGCAGCUGCGACAGCUCCAAGGCCAGCAGCCAAACGCUGGCCUUUCGACC ----(((((.(((...........)))))))).(((((.........((....))....)))))(((((((((........)))))))))...... ( -32.72) >consensus ____GGCAGCGGAUCCAACAACACAUCCUACCUGGAGCACGAGCAAAGCAGCUGCGACAGCUCCAAGGCCAGCAGCCAAACGCUGGCCUUUCGACC ....((...(((.....................(((((....(((.......)))....)))))(((((((((........)))))))))))).)) (-18.71 = -19.97 + 1.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:13 2006