Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,004,020 – 1,004,126 |
Length | 106 |
Max. P | 0.915728 |
Location | 1,004,020 – 1,004,126 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.13 |
Mean single sequence MFE | -21.96 |
Consensus MFE | -12.92 |
Energy contribution | -13.56 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.17 |
Mean z-score | -2.11 |
Structure conservation index | 0.59 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915728 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1004020 106 + 22224390 UCCGACUCAUAAGCUAUCAAAGUCUGGGUUAAUUUUU-GGCCUCGUCUCUCCUGAAGGUC-----UUCCGCUCGCUCACUGAGCUCCU--------CAUUUGUCCCCCUGUGGCCCACCU ...((((.............))))(((((((......-(((((..((......)))))))-----....(((((.....)))))....--------..............)))))))... ( -21.52) >DroSec_CAF1 89500 104 + 1 UCCGACUCAUAAUCUUUC---CUCUGGGUUAAUUUUUAGGCCUCUUCUCUCCUGAAGGUC-----UUCCGCUCGCUCACUGAGCUCCU--------CAUUUGUCCCCCUGUGGCCUACCU ...((((((.........---...))))))......(((((((((((......)))))..-----....(((((.....)))))....--------...............))))))... ( -22.60) >DroSim_CAF1 66688 104 + 1 UCCGACUCAUAAUCUUUC---CUCUGGGUUAAUUUUUAGGCCUCUUCUCUCCUGAAGGUC-----UUCCGCUCGCUCACUGAGCUCCU--------CAUUUGUCCCCCUGUGGCCUACCU ...((((((.........---...))))))......(((((((((((......)))))..-----....(((((.....)))))....--------...............))))))... ( -22.60) >DroEre_CAF1 98512 114 + 1 UCCGACUCAUAAGCUAUCAAACUCAGGGUUCACUUGUAGGCCUCUUCUCUCCUGAAGGUC-----UUCCGCUCGCUCACUAAGCUGCUCAUUUCCUCAUUUGUCCCCCUAUGGGACACC- ...(((...............((((((.....)))).))....((((......)))))))-----....((..(((.....))).)).............((((((.....))))))..- ( -22.20) >DroYak_CAF1 92101 104 + 1 ----------------UUAAACUCAGGGUUCAUCUGUAGGCCUCUUCUCACCUGAAGGUCUGCUCUUCCGCUCGCUCACUAAGCUCCUCAUCUCCCCAUUUAUCCCCCUGUAACCCACCU ----------------.........(((((((...((((((((..((......))))))))))..........(((.....)))........................)).))))).... ( -20.90) >consensus UCCGACUCAUAAGCUAUCAAACUCUGGGUUAAUUUUUAGGCCUCUUCUCUCCUGAAGGUC_____UUCCGCUCGCUCACUGAGCUCCU________CAUUUGUCCCCCUGUGGCCCACCU .........................((((((.......(((((..((......))))))).........(((((.....)))))..........................)))))).... (-12.92 = -13.56 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:35 2006