Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,440,441 – 8,440,546 |
Length | 105 |
Max. P | 0.831593 |
Location | 8,440,441 – 8,440,546 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 78.71 |
Mean single sequence MFE | -31.40 |
Consensus MFE | -22.94 |
Energy contribution | -22.72 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.17 |
Mean z-score | -1.47 |
Structure conservation index | 0.73 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.831593 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8440441 105 - 22224390 UGCCACUUGAACGGAAACAGCAGGGAGACAAUGGCUUCGGCCACAGCAGUCAACGUGGCAGGUCUGCGG---CGCGAAUA--AAUCGAUAUGU--AGGAUACGGUAAGGAUA ((((((((((..(....).((..(....)..((((....))))..))..)))).))))))(.((((((.---..(((...--..)))...)))--)))...).......... ( -35.40) >DroGri_CAF1 58845 106 - 1 UGCCACUUGAACGGAAACAGCAGCGACACAAUCGCCUCAGCGACGGCAGUCAGCGUUGCAGGUCUGCAA-----UGAAGAUUCGGCGAUUCGUUAAUUAUAUG-CAAACAUA (((.........(....)...(((((....((((((...((....))((((..(((((((....)))))-----))..)))).)))))))))))........)-))...... ( -29.20) >DroSec_CAF1 7811 103 - 1 UGCCACUUGAACGGAAACAGCAGGGAGACAAUGGCUUCGGCCACAGCAGUCAACGUGGCAGGUCUGCGG-----CGAAUA--AAUCGAUAUGU--AGGAUACGGUAAGGGUA ((((((((((..(....).((..(....)..((((....))))..))..)))).))))))(.((((((.-----(((...--..)))...)))--)))...).......... ( -34.70) >DroEre_CAF1 3347 103 - 1 UGCCACUUGAACGGGAACAGCAGGGAGACAAUGGCCUCGGCCACAGCAGUCAAUGUGGCAGGUCUGCGG-----GAAAUA--AAUCGAUAUGU--AAAAUGCGGUAAGAAAC ((((((((((..(....).((..(....)..((((....))))..))..)))).))))))...(((((.-----...(((--......)))..--....)))))........ ( -27.40) >DroYak_CAF1 2047 103 - 1 UGCCACUUGAACGGAAACAGCAGGGAGACAAUGGCCUCGGCCACAGCAGUCAAUGUGGCAGGUCUGCGG-----GUAUUA--AAUCGAUAUGU--AUUAUACGGUAAGGACC ((((((((((..(....).((..(....)..((((....))))..))..)))).))))))(((((....-----((((..--...........--...)))).....))))) ( -31.39) >DroAna_CAF1 1767 104 - 1 UGCCACUUGAACGGAAACAGCAGGGAGACAAUGGCCUCGGCCACGGCCGUCAAGGUGGCGGGUCUGCAAGGAGGCAAUUA--AAAGCACAUU---AAAUUAU--UAA-GAGG ((((.(((....(....).(((((....)..((((....))))...(((((.....)))))..)))).))).))))....--..........---.......--...-.... ( -30.30) >consensus UGCCACUUGAACGGAAACAGCAGGGAGACAAUGGCCUCGGCCACAGCAGUCAACGUGGCAGGUCUGCGG_____CGAAUA__AAUCGAUAUGU__AAAAUACGGUAAGGAUA ((((((((((..(....).((..(....)..((((....))))..))..)))).)))))).................................................... (-22.94 = -22.72 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:05 2006