Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,435,380 – 8,435,500 |
Length | 120 |
Max. P | 0.905782 |
Location | 8,435,380 – 8,435,500 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.06 |
Mean single sequence MFE | -51.14 |
Consensus MFE | -33.10 |
Energy contribution | -33.33 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.12 |
Mean z-score | -2.70 |
Structure conservation index | 0.65 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.905782 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8435380 120 - 22224390 GGUGCUUGAGCACCACCAUGGUGGCCAGGGUUUUUAGAGUGGGCUCAAAGUCGAGCACAUGCAGAUCGCUGUAGUCGAUAAGCGCCACACCGGGCGGAACAACUCCGCCAGCCGCUGCGG (((((....))))).((..((((((...(((.......(((((((....(((((..(((.((.....)))))..))))).))).))))))).((((((.....)))))).))))))..)) ( -50.71) >DroEre_CAF1 995 120 - 1 GGUGCUUAAGCACCACCAUGGUGGCCAGGGUUUUCAGAGUGGGCUCAAAGUCGAGCACAUGCAGAUCGCUGUAGUCGAUGAGCGCCACACCGGGAGGCACAACUCCGCCAGCCGCCGUGG (((((....))))).((((((((((...(((.......(((((((((...((((..(((.((.....)))))..))))))))).))))....((((......))))))).)))))))))) ( -59.20) >DroAna_CAF1 7300 120 - 1 GAUACUUCAGCACCACCAUGGUGGCCAAUGUUUUCAGUGUGGGCUCAAAGUCGAGCACAUGCAGAUCGCUGUAAUCAAUCAAAACUACGCUGGAUGCAGCUGCUCCACCCGCGGCUGCCG ........((((((((....))))....))))((((((((((((((......))))...(((((....)))))...........)))))))))).((((((((.......)))))))).. ( -43.50) >consensus GGUGCUUAAGCACCACCAUGGUGGCCAGGGUUUUCAGAGUGGGCUCAAAGUCGAGCACAUGCAGAUCGCUGUAGUCGAUAAGCGCCACACCGGGAGGAACAACUCCGCCAGCCGCUGCGG (((((....))))).((.(((((((.............((((((((......))))...(((((....)))))...........))))..((((.(......)))))...))))))).)) (-33.10 = -33.33 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:02 2006