Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,430,421 – 8,430,524 |
Length | 103 |
Max. P | 0.897774 |
Location | 8,430,421 – 8,430,524 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 93.49 |
Mean single sequence MFE | -12.83 |
Consensus MFE | -12.55 |
Energy contribution | -12.33 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.07 |
Mean z-score | -1.88 |
Structure conservation index | 0.98 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897774 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8430421 103 - 22224390 UUUUAUUUUAUUUCGCUUUUUUACAUAUCCGUUCUUUGUUUUUCAAUACUCUGAAGUGCACAACACUUUUUGUGUACAUAUUUAAUGCGUUCUGUUUUUUUUU .............(((....(((.((((.............((((......))))((((((((......)))))))))))).))).))).............. ( -13.90) >DroSec_CAF1 16157 101 - 1 AUUUAUUUUAUUUCGCUUUUUUACAUAUCCGUUCUUGGUUUUUCAAUACUCUGAAGUGCACAACACUUUUUGUGUAUAAAUUUAAUGCGUUCU--UCUUGUUU .............(((...............(((..(((........)))..)))((((((((......)))))))).........)))....--........ ( -13.00) >DroSim_CAF1 13853 101 - 1 AUUUAUUUUAUUUCGCUUUUUUACAUAUCCGUUCUUUUGUUUUCAAUACUCUGAAGUGCACAACACUUUUUGUGUAUAUAUUUAAUGCGUUCU--UUUUGUUU .............(((....(((.((((.............((((......))))((((((((......)))))))))))).))).)))....--........ ( -11.60) >consensus AUUUAUUUUAUUUCGCUUUUUUACAUAUCCGUUCUUUGUUUUUCAAUACUCUGAAGUGCACAACACUUUUUGUGUAUAUAUUUAAUGCGUUCU__UUUUGUUU .............(((.........................((((......))))((((((((......)))))))).........))).............. (-12.55 = -12.33 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:01 2006