Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,426,545 – 8,426,665 |
Length | 120 |
Max. P | 0.861527 |
Location | 8,426,545 – 8,426,665 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.75 |
Mean single sequence MFE | -31.73 |
Consensus MFE | -23.17 |
Energy contribution | -22.40 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.14 |
Mean z-score | -1.66 |
Structure conservation index | 0.73 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861527 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8426545 120 + 22224390 AAAAGAAAAUAUAAAAAAUGUGGCAAACAGGAAAUUGCCGGCGAAAAGUGUCUACAUAUGACAGUUUCAUGUGUGGGCCCACGGACAACCCACUUUCUGGCUGAGUUUGCCCGGUUUGGU ...........((((...((.(((((((.((......))(((.((((((((((((((((((.....))))))))))))....((.....))))))).).)))..))))))))).)))).. ( -35.70) >DroEre_CAF1 11392 105 + 1 ---------------AAAAGUGGCAAACAGGAAAUUGUUGGCGAAAAGUGUCUACAUAUGACAAUCUCAUGUGUGGGCCCACAGACAAUCCACUUUCUGGCUGAGUUUGCCCGGUUUGGU ---------------....(.(((((((.(((..(((((.((.....))((((((((((((.....)))))))))))).....))))))))....((.....))))))))))........ ( -31.50) >DroYak_CAF1 8577 96 + 1 --------------UAAAAGUGGCAAACAGGAAAUGGCUGGCGAAAAGUGUCUACAUAUGACAAUUUCGUGUGUGGGCCCACAGACAACCCAUUUUCCGGCUG----------GCUUGCU --------------.......(((((.(((((((((((((((.....))((((((((((((.....))))))))))))...))).....)))))))....)))----------..))))) ( -28.00) >consensus _______________AAAAGUGGCAAACAGGAAAUUGCUGGCGAAAAGUGUCUACAUAUGACAAUUUCAUGUGUGGGCCCACAGACAACCCACUUUCUGGCUGAGUUUGCCCGGUUUGGU .....................(((.....(((((((((((((.....))((((((((((((.....))))))))))))...))).))).....))))).))).................. (-23.17 = -22.40 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:00 2006