Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,424,017 – 8,424,115 |
Length | 98 |
Max. P | 0.991516 |
Location | 8,424,017 – 8,424,115 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.64 |
Mean single sequence MFE | -22.32 |
Consensus MFE | -19.66 |
Energy contribution | -19.10 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.17 |
Mean z-score | -2.20 |
Structure conservation index | 0.88 |
SVM decision value | 2.27 |
SVM RNA-class probability | 0.991516 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8424017 98 + 22224390 CCGUGGCCAUAAAACUGUCCGACUGGCUGGUCAUAUUGCCAAGUUGCUCUAAUUUAUGGAGCACCACCAAAUCCACCCAAACC---------------------CACCAACCACCACG-G ((((((..............(((((((..........))).))))((((((.....)))))).....................---------------------.........)))))-) ( -23.60) >DroSec_CAF1 9895 98 + 1 CCGUGGCCAUAAAACUGUCAGACUGGCUGAUCAUAUUGCCAAGUUGCUCUAAUUUAUGGAGCACCACCAAAUCCACCCAAACC---------------------CACCAACCAUUACG-G (((((((.(((.....(((((.....)))))..))).)))..(.(((((((.....))))))).)..................---------------------...........)))-) ( -20.60) >DroSim_CAF1 7603 98 + 1 CCGUGGCCAUAAAACUGUCAGACUGGCUGGUCAUAUUGCCAAGUUGCUCUAAUUUAUGGAGCACCACCAAAUCCACCCAAACC---------------------CACCAACCACCACG-G ((((((..............(((((((..........))).))))((((((.....)))))).....................---------------------.........)))))-) ( -23.60) >DroEre_CAF1 8857 97 + 1 CCGUGGCCAUAAAACUGUCCGACUGGCUAGUCAUAUUGCCAAGUUGCUCUAAUUUAUGGAGCACCACCAAAUCCACUCAAACC----------------------ACCAACCACCAUG-G ((((((..............(((((((..........))).))))((((((.....)))))).....................----------------------........)))))-) ( -21.80) >DroYak_CAF1 5992 120 + 1 CCGUGGUCAUAAAACUGUCCGACUGGCUGGUCAUAUUGCCAAGUUGCUCUAAUUUAUGGAGCACCACCAAAUCCACCCAAACCAACAUUCAAACCACCCAAAACCAGCAACCACCAUGCG ..(((((.............(((((((..........))).))))((((((.....))))))))))).......................................(((.......))). ( -22.00) >consensus CCGUGGCCAUAAAACUGUCCGACUGGCUGGUCAUAUUGCCAAGUUGCUCUAAUUUAUGGAGCACCACCAAAUCCACCCAAACC_____________________CACCAACCACCACG_G .(((((..............(((((((..........))).))))((((((.....))))))...................................................))))).. (-19.66 = -19.10 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:59 2006