Locus 3171

Sequence ID X_DroMel_CAF1
Location 8,420,620 – 8,420,721
Length 101
Max. P 0.510893
window5206

overview

Window 6

Location 8,420,620 – 8,420,721
Length 101
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 91.10
Mean single sequence MFE -20.02
Consensus MFE -15.52
Energy contribution -16.20
Covariance contribution 0.68
Combinations/Pair 1.10
Mean z-score -1.44
Structure conservation index 0.78
SVM decision value -0.04
SVM RNA-class probability 0.510893
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8420620 101 + 22224390
CAUAAAACAAAUUAAGCAAAUAAUAGUGACCGAAAAGGGAGAACCGGUUGCAAAUCAAGUGGCAAAUAAAACACGUCAUUUGUUCGUUUGUUUGAUCCAG---C
..........(((((((((((....(..((((............))))..)....((((((((...........))))))))...)))))))))))....---. ( -23.70)
>DroSec_CAF1 5933 103 + 1
CAUAAAACAAAUUAAGCAAAUAGAAGUGACCGAAAAGGGAGAAGCGGUUGCAAAUCAAGUGGCAAAUAAAACACGUCAUUUGUUCGUUUGU-CGAUCCAGCAGC
...............((((((.((((..((((............))))..)....((((((((...........)))))))))))))))))-............ ( -19.50)
>DroSim_CAF1 3582 103 + 1
CAUAAAACAAAUUAAGCAAAUAAUAGUGACCGAAAAGGGAGAACCGGUUGCAAAUCAAGUGGCAAAUAAAACACGUCAUUUGUUCGUUUGU-CGAUCCAGCAGC
...............((((((....(..((((............))))..)....((((((((...........))))))))...))))))-............ ( -18.80)
>DroEre_CAF1 6260 96 + 1
CAUAAAACAAAUUAAGCAAAUAGAAGUGACCGAAAAG-GAGAACCGGUU-CAAAUCAAGUGGCAAAUAAAACACGUCAUU--GUCGUUUGC-CGAUCCAG---C
...............((((((...((((((.(((..(-(....))..))-).......(((..........)))))))))--...))))))-........---. ( -19.00)
>DroYak_CAF1 3600 97 + 1
UAUAAAACAAAUUAAGCAAAUAAAAGUGACCGCAAAG-GAGAACCGGUCGCAAAUCAAGUGGCAAAUAAAACACGUCAUU--UUCGCUUGU-AGAUCCAG---C
............(((((........(((((((.....-......))))))).....(((((((...........))))))--)..))))).-........---. ( -19.10)
>consensus
CAUAAAACAAAUUAAGCAAAUAAAAGUGACCGAAAAGGGAGAACCGGUUGCAAAUCAAGUGGCAAAUAAAACACGUCAUUUGUUCGUUUGU_CGAUCCAG___C
............(((((........(((((((............)))))))....((((((((...........))))))))...))))).............. (-15.52 = -16.20 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:58 2006