Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,419,413 – 8,419,524 |
Length | 111 |
Max. P | 0.997874 |
Location | 8,419,413 – 8,419,524 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.77 |
Mean single sequence MFE | -42.12 |
Consensus MFE | -24.42 |
Energy contribution | -24.58 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.24 |
Mean z-score | -2.16 |
Structure conservation index | 0.58 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612038 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8419413 111 + 22224390 AAGCUUUUGUUGUAGUGUAAC---------CGGAGCAUCAGCGCGUGAGCUUUUCGGUAUUCACGCUGCACUGACGGAUGGUCACACUAUGCGCGGCAUUUGGCAUUUUUGGCCGCGCAA ..........((((((((.((---------((((((....))((....))..))))))....)))))))).((((.....)))).....((((((((..............)))))))). ( -39.94) >DroSec_CAF1 4682 111 + 1 AAGCUUUUGUUGUAGUGUAAC---------CGAAGCAUCCGCGCGUGAGCUUUUUGGUAUUUACGCCUCACUGGCGGAUGGUCACACUGUGCGCGGCAUUUGGCAUUUUUGGCCGCGCAA ............((((((.((---------(.....((((((((....)).....(((......)))......))))))))).))))))((((((((..............)))))))). ( -40.74) >DroSim_CAF1 2323 110 + 1 AAGCUUUUGUUGUAGUGUAAC---------CGAA-CAUCCGCGCGUGAGCUUUUUGGUAUUUACGCCUCACUGGCGGAUGGUCACACUGUGCGCGGCAUUUGGCAUUUUUGGCCGCGCAA ............((((((.((---------(...-.((((((((....)).....(((......)))......))))))))).))))))((((((((..............)))))))). ( -41.14) >DroEre_CAF1 4997 111 + 1 AAGCUUUCGCUGUAGUGUGAC---------GGUAACAGCAGCGUGCGAGCUUUUUGGUAUUUACGCUGCACCGGCGAACGGUCACACUGCGCUCGGCUUUUGGUAUUUUUGGCCGCGCAA .(((....)))((((((((((---------.......((((((((.(.(((....))).).))))))))..((.....))))))))))))((.(((((............))))).)).. ( -45.80) >DroYak_CAF1 2326 120 + 1 AAGCUUUCGUUAUAAUGUGACCGUAGCGACCGUAACAGCAGCGUGCGAGCUUUUCAGUAUUUACGCUGCGCUGACGGACGGUCACACUGCACGCGACUUUUGGCAUUUUUGGCCGCGCAA ..((..((((..((.(((((((((.....((((....((((((((.(.(((....))).).))))))))....))))))))))))).))...)))).....(((.......))))).... ( -43.00) >consensus AAGCUUUUGUUGUAGUGUAAC_________CGAAACAUCAGCGCGUGAGCUUUUUGGUAUUUACGCUGCACUGGCGGAUGGUCACACUGUGCGCGGCAUUUGGCAUUUUUGGCCGCGCAA .(((....)))(((((((........................(((((((((....)))..))))))......(((.....))))))))))(((((((..............))))))).. (-24.42 = -24.58 + 0.16)
Location | 8,419,413 – 8,419,524 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.77 |
Mean single sequence MFE | -42.36 |
Consensus MFE | -30.71 |
Energy contribution | -29.07 |
Covariance contribution | -1.64 |
Combinations/Pair | 1.39 |
Mean z-score | -3.73 |
Structure conservation index | 0.72 |
SVM decision value | 2.95 |
SVM RNA-class probability | 0.997874 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8419413 111 - 22224390 UUGCGCGGCCAAAAAUGCCAAAUGCCGCGCAUAGUGUGACCAUCCGUCAGUGCAGCGUGAAUACCGAAAAGCUCACGCGCUGAUGCUCCG---------GUUACACUACAACAAAAGCUU .((((((((..............))))))))((((((((((...(((((((...((((((............)))))))))))))....)---------)))))))))............ ( -44.44) >DroSec_CAF1 4682 111 - 1 UUGCGCGGCCAAAAAUGCCAAAUGCCGCGCACAGUGUGACCAUCCGCCAGUGAGGCGUAAAUACCAAAAAGCUCACGCGCGGAUGCUUCG---------GUUACACUACAACAAAAGCUU .((((((((..............)))))))).(((((((((((((((..(((((.(..............))))))..)))))).....)---------))))))))............. ( -41.78) >DroSim_CAF1 2323 110 - 1 UUGCGCGGCCAAAAAUGCCAAAUGCCGCGCACAGUGUGACCAUCCGCCAGUGAGGCGUAAAUACCAAAAAGCUCACGCGCGGAUG-UUCG---------GUUACACUACAACAAAAGCUU .((((((((..............)))))))).(((((((((((((((..(((((.(..............))))))..)))))).-...)---------))))))))............. ( -42.18) >DroEre_CAF1 4997 111 - 1 UUGCGCGGCCAAAAAUACCAAAAGCCGAGCGCAGUGUGACCGUUCGCCGGUGCAGCGUAAAUACCAAAAAGCUCGCACGCUGCUGUUACC---------GUCACACUACAGCGAAAGCUU ..(((((((..............)))..))))((((((((.((..((.((((((((..............))).)))).).))....)).---------))))))))..(((....))). ( -37.88) >DroYak_CAF1 2326 120 - 1 UUGCGCGGCCAAAAAUGCCAAAAGUCGCGUGCAGUGUGACCGUCCGUCAGCGCAGCGUAAAUACUGAAAAGCUCGCACGCUGCUGUUACGGUCGCUACGGUCACAUUAUAACGAAAGCUU ..(((((((..............)))))))..(((((((((((((((.((((((((((.....((....)).....))))))).))))))).....)))))))))))....(....)... ( -45.54) >consensus UUGCGCGGCCAAAAAUGCCAAAUGCCGCGCACAGUGUGACCAUCCGCCAGUGCAGCGUAAAUACCAAAAAGCUCACGCGCUGAUGCUACG_________GUUACACUACAACAAAAGCUU .((((((((..............)))))))).((((((((((((.((..(((.(((..............))))))..)).))))..............))))))))............. (-30.71 = -29.07 + -1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:57 2006