Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,418,477 – 8,418,585 |
Length | 108 |
Max. P | 0.850039 |
Location | 8,418,477 – 8,418,585 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.58 |
Mean single sequence MFE | -25.90 |
Consensus MFE | -12.67 |
Energy contribution | -13.45 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.15 |
Mean z-score | -2.16 |
Structure conservation index | 0.49 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.850039 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8418477 108 - 22224390 AAAGUCAAGAAGCGACCGAGCAGAUAAUACAGCUCGGGAAUUAAACAAAUGCGUAUUUUUUUUGUUUGAAAUCAAUAAAUCCAAGUUGGCAC------------GACAAUAAUCAAAAUG ...(((((.......((((((..........))))))...(((((((((...........)))))))))................)))))..------------................ ( -20.50) >DroSec_CAF1 2647 119 - 1 AAAGUCAAGAAGCAUCCGAGCUGAUAAUACAGCUCGGGAAUUAAACAAAAGCG-UAUUUUUUCGUUUGAAAUUAAUAAAUUCAAUUCGGCACGUGCGCAAAAGCGACAAUAAUCAAAAUG ...(((........(((((((((......)))))))))............(((-(((....(((.(((((.........)))))..)))...))))))......)))............. ( -30.10) >DroSim_CAF1 400 120 - 1 AAAGUCAAGAAGCAACCGAGCAGAUAAUACAGCUCGGGAAUUAAACAAAAGUAUUGUUUUUUUGUUUGAAAUUAAUAAAUUCAAUUCGGCACGUGCGCAAAAGCGACAAUAAUCAAAAUG ...(((.....(((.((((((..........))))))...(((((((((((.......)))))))))))........................)))((....)))))............. ( -26.40) >DroEre_CAF1 2048 115 - 1 AGUGUCAUGAAGCAUCUGAACAGAUAAUACGGCUCGGGAAUUGAACAACAGCGUUUGUU-----UUUAAAAUUAAUAAGUCGAAUGUGGCACGUGCGCAAAAGCGACACUAUUAAAAAAG .(((((((.....((((....))))....(((((.(..((((((((((......)))))-----)....))))..).)))))...)))))))((((((....))).)))........... ( -26.70) >DroYak_CAF1 411 115 - 1 AGUGUCAUGAAGCAUCCGAACAGAUAAUACGUCUCGGAAAUUGAACAAAAGCGUUUGUU-----UUUCAAAUAAGUAAUCCGAAUGUGGCACGUGCGCAAAAGCGACACUAAUCAAAAAG .(((((........(((((...(((.....))))))))............(((((((..-----((.(......).))..))))))))))))((((((....))).)))........... ( -25.80) >consensus AAAGUCAAGAAGCAUCCGAGCAGAUAAUACAGCUCGGGAAUUAAACAAAAGCGUUUUUUUUU_GUUUGAAAUUAAUAAAUCCAAUUUGGCACGUGCGCAAAAGCGACAAUAAUCAAAAUG ...(((.....((..((((((.(......).))))))...((((((.................))))))...................))....((......)))))............. (-12.67 = -13.45 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:55 2006