Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,405,349 – 8,405,467 |
Length | 118 |
Max. P | 0.622004 |
Location | 8,405,349 – 8,405,467 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.23 |
Mean single sequence MFE | -30.73 |
Consensus MFE | -24.76 |
Energy contribution | -24.95 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.15 |
Mean z-score | -1.53 |
Structure conservation index | 0.81 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622004 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8405349 118 + 22224390 GGAAUUCCUCGCUGUUUCAUCAUUGCCUUCGCUAGGCGACGAAUGGGAAAGUAAGGGCACGGGCAAAAACUCCCUCUUGCUCAUCACA--UAUGAGUAACUGGUGAAUCAGUGAUGACGA .....((.((((((.(((((((((((((.....)))))).....((((..((....((....))....))))))..((((((((....--.)))))))).))))))).)))))).))... ( -36.60) >DroSim_CAF1 7657 117 + 1 GGAAUUCCUCGCUGUUUCAUCAUUGCCUUCGCCAGCCGACGAAUGGGAAUGCAAG-ACACAGACAAAAACUCCCUCUUGCUCACCACG--UAUGAGUAGCUGGUGAAUCAGUGAUGACGA ((....))........(((((((((..(((((((((..((..(((((...(((((-(...((.......))...))))))...)).))--)....)).))))))))).)))))))))... ( -36.80) >DroEre_CAF1 8027 119 + 1 AGAAUUCCUCAAUCUUUCAUCAAAGCCUCUGCCAGUCGACGAAUGGGAAAGCAAA-ACACAACAAAAAACUCUCUCUUGCUCUCAAAAUACAUGAGUAACUGGUGAAUCAGUGAUGACGA ................((((((..(..((.((((((..((..(((.((.(((((.-....................))))).))......)))..)).))))))))..)..))))))... ( -22.10) >DroYak_CAF1 7655 117 + 1 AGAAUUCCUCACCUUUUCAUCAUUGCCUGCGCCAGCCGACGAAUGGGAAAGCAAA-ACACAAACAAAAACUCUCUCUUGCUCACCACU--UAUGAGUAACUGGUGAAUCAGUGAUGACGA ................(((((((((....((((((.........((((.((....-.............)).))))(((((((.....--..)))))))))))))...)))))))))... ( -27.43) >consensus AGAAUUCCUCACUGUUUCAUCAUUGCCUUCGCCAGCCGACGAAUGGGAAAGCAAA_ACACAAACAAAAACUCCCUCUUGCUCACCACA__UAUGAGUAACUGGUGAAUCAGUGAUGACGA ................(((((((((..((((((((.........((((......................))))..((((((...........)))))))))))))).)))))))))... (-24.76 = -24.95 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:53 2006