Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,404,459 – 8,404,564 |
Length | 105 |
Max. P | 0.938283 |
Location | 8,404,459 – 8,404,564 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.72 |
Mean single sequence MFE | -32.33 |
Consensus MFE | -26.85 |
Energy contribution | -26.35 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.22 |
Mean z-score | -2.12 |
Structure conservation index | 0.83 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.938283 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8404459 105 - 22224390 GAAAAAGUCUUAUUCAAAGCCAUGAGAUGCGUUAAGAAUUGCGCAGCCAAAAAGAAGGGCAAGGUAGAUGAUGACCCCUUGUCCGUUUUGAGCGUGGA---------------GAAAUCA ......(((((((........)))))))((((........)))).(((((((....((((((((............)))))))).))))).))...((---------------....)). ( -28.90) >DroSec_CAF1 3653 120 - 1 GAAAAAGUCUUAUCCAAAGCCAUGAGAUGCGUAAAGAAUUGCGCAGCUAAAAAGAAGGGCAAGGUAGAUGAAGACCCCUUGUCCUUUUUGAACGUGGAGAUGAACGGCGUACAGAAAUCU ......((((((((.....(((((((.(((((((....))))))).))...(((((((((((((............)))))))))))))...))))).)))))..)))............ ( -35.60) >DroEre_CAF1 7101 120 - 1 GAAAAAGUAUUAUCCAAAGCCAUGAGAUGUGUUAAGAAUUGCGCAGCCAAGAAGAAGGGCAGGGUAGAUGAUGACCCCCUGUCUUUUUUGAACGUGGAGAUGAACGAUGGGCAGAAAUGA ......((.(((((.....(((((...(((((........)))))......(((((((((((((............)))))))))))))...))))).)))))))......((....)). ( -30.60) >DroYak_CAF1 6751 120 - 1 GAAAAAGCAUUAUCCAAAGCCAUGAGAUGCGUUAAGAAUUGCGCGGCCAAGAAGAAGGGCAGGGUAGAUGAUGACCCCUUGGCCUUUUUGAACGUGGAGAUGAACGAUGAGCUGAAAUCA ((...(((.(((((((...(((((....((((........))))(((((((..(.....).((((........)))))))))))........)))))...))...))))))))....)). ( -34.20) >consensus GAAAAAGUAUUAUCCAAAGCCAUGAGAUGCGUUAAGAAUUGCGCAGCCAAAAAGAAGGGCAAGGUAGAUGAUGACCCCUUGUCCUUUUUGAACGUGGAGAUGAACGAUG_GCAGAAAUCA ...................(((((...(((((........)))))......(((((((((((((............)))))))))))))...)))))....................... (-26.85 = -26.35 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:49 2006