Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,401,829 – 8,401,947 |
Length | 118 |
Max. P | 0.828218 |
Location | 8,401,829 – 8,401,947 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.62 |
Mean single sequence MFE | -39.62 |
Consensus MFE | -26.69 |
Energy contribution | -29.68 |
Covariance contribution | 2.99 |
Combinations/Pair | 1.25 |
Mean z-score | -1.37 |
Structure conservation index | 0.67 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.828218 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8401829 118 + 22224390 ACCUGCAGAUUAGAUUGGGCAGUCUGGAGCAGCUCCAAGCGCUC--GUCAGUCAUGGUGAAGAUCUCUUCGAUGUGACUGAGAAUCAUCUGCAGGUACUCCGCCGAACUGCCCGCUUGGU ((((((((((..((((((((.(..(((((...)))))..)))))--.((((((((..(((((....)))))..)))))))).)))))))))))))).....(((((.(.....).))))) ( -50.50) >DroSec_CAF1 1034 118 + 1 ACCUGCAGAUUAGACUGGGCAGUCUGGAGCAGCUCCAAGCGCUC--GUCAGUCAUUGUGAAGAUCUCUUCGAUGUGACUGAGAAUCAUCUGCAAGUACUCCGCCGAACUGCCAGCUUGGU ((.(((((((((((((....))))))((((.((.....))))))--.((((((((..(((((....)))))..)))))))).....))))))).)).....(((((.(.....).))))) ( -42.30) >DroSim_CAF1 4834 120 + 1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGUGGAUUCAGUCAUUGUGAAGAUCUCUUCGAUGUGACUGAGAAUCAUCUGCACGUACUCCGCCGAACUGCCCGCUUGGU ........................................((((((.((((((((..(((((....)))))..))))))))((....)).........)))))).....(((.....))) ( -25.40) >DroPer_CAF1 3165 118 + 1 ACUUGGAGAUUGGACUGGGCGGUUUUAAGUAACUCCACGCGACC--GUCGGGCAUGGUCACGAUCUCGUCGAUGUGGCUGAGAAUCAUUUUGAGGUAUCCAGCGGAGCUUCCAGCCUUCU .....(((((((((((((((((((....((......))..))))--))).....))))).)))))))...((...(((((.(((....)))(((((.(((...))))))))))))).)). ( -34.50) >DroEre_CAF1 4482 118 + 1 ACCUGCAGAUUGGACUGGGCAGUCUGGAGUAACUCCACACGCUC--GUCAGUCAUGGUGAAGAUCUCCUCGAUGUGACUGAGAAUCAUCUGCAGAUACUCCGCUGAACUGCCCGCUUGGC ..((((((((.((...((((.((.(((((...))))).))))))--.((((((((..(((.(....).)))..))))))))...))))))))))...............(((.....))) ( -39.00) >DroYak_CAF1 4120 118 + 1 ACCUGCAGAUUGGACUGGGCAGUCUGGAGUAGCUCCACGCGCUC--GUCGGUCAUGGUGAAGAUCUCCUCGAUGUGACUGAGAAUCAUCUGCAGGUACUCCGCCGAACUGCCUGCUUGGC ((((((((((.((...((((.((.(((((...))))).))))))--.((((((((..(((.(....).)))..))))))))...)))))))))))).....(((((.(.....).))))) ( -46.00) >consensus ACCUGCAGAUUGGACUGGGCAGUCUGGAGUAGCUCCACGCGCUC__GUCAGUCAUGGUGAAGAUCUCUUCGAUGUGACUGAGAAUCAUCUGCAGGUACUCCGCCGAACUGCCCGCUUGGU ((((((((((......((((.((.(((((...))))).))))))...((((((((..(((((....)))))..)))))))).....)))))))))).....(((((.(.....).))))) (-26.69 = -29.68 + 2.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:30 2006