Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,398,416 – 8,398,536 |
Length | 120 |
Max. P | 0.935775 |
Location | 8,398,416 – 8,398,536 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.54 |
Mean single sequence MFE | -21.23 |
Consensus MFE | -17.46 |
Energy contribution | -17.27 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -2.35 |
Structure conservation index | 0.82 |
SVM decision value | 1.25 |
SVM RNA-class probability | 0.935775 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8398416 120 + 22224390 ACAAAAACCCUCGAGAUGCCAGUUGCGUCUCUGGUUUUCACUUUAAUCCAAAUAUCUGUAAUAAUAACGAUGUAUUCAUAAUUUUUUUUAAAAACUAAAAAACACACACAAAGUGGCACU ...((((((...(((((((.....))))))).))))))((((((.......(((((.((.......)))))))..........(((((((.....))))))).......))))))..... ( -21.90) >DroSim_CAF1 717 113 + 1 ----AAACCCUCGAGAUGCCAGUUGCGUCUCUGGUUUCCACU-UAAUCCAAAUAUCUGUAAUAAUAACGAUGUAUUCAUAAUUUUUUUUA--AACUAAAAAACACACACAAAGUGACACU ----(((((...(((((((.....))))))).))))).((((-(.......(((((.((.......))))))).........((((((..--....))))))........)))))..... ( -19.00) >DroEre_CAF1 1153 111 + 1 -----AACCCUCGAGAUGCUAGCUGCGUCUCUGGUUUCCACU-UAAUCCAGAUAUCUGUAAUAAUGAAGAUGUAUUCAUAAUUUUUUUUA---ACUAAAAAACACACACAAAGUGGCACU -----((((...(((((((.....))))))).)))).(((((-(....(((....))).....(((((......)))))...........---.................)))))).... ( -24.10) >DroYak_CAF1 707 111 + 1 -----AACCCUCGAGAUGCUGGUUGCAUCUCUGGUUUCCACU-UAAUCCAGAUAUCUGUAAUAAUAACGAUGUAUUCAUAAUUUUUUUUA---ACUAAAAAACACACACAAAGUGACACU -----((((...(((((((.....))))))).))))..((((-(.......(((((.((.......)))))))........((((((...---...))))))........)))))..... ( -19.90) >consensus _____AACCCUCGAGAUGCCAGUUGCGUCUCUGGUUUCCACU_UAAUCCAAAUAUCUGUAAUAAUAACGAUGUAUUCAUAAUUUUUUUUA___ACUAAAAAACACACACAAAGUGACACU .....((((...(((((((.....))))))).))))..((((.........(((((............)))))..........(((((((.....))))))).........))))..... (-17.46 = -17.27 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:29 2006