Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,395,044 – 8,395,139 |
Length | 95 |
Max. P | 0.843210 |
Location | 8,395,044 – 8,395,139 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 82.60 |
Mean single sequence MFE | -21.15 |
Consensus MFE | -12.88 |
Energy contribution | -13.38 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.19 |
Mean z-score | -2.31 |
Structure conservation index | 0.61 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843210 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8395044 95 + 22224390 UCAUCAAUGAGAAUAUUCGUUCAUUUGCUGCUGUCCACCAGUGGACUA------------------UCGAAAAUAUCGAUGGAAAUCGAUCAUCAAAUCAUUUCGAGCCACUU .....((((((........))))))....((.(((((....)))))..------------------((((((((((((((....)))))).)).......))))))))..... ( -19.11) >DroSec_CAF1 2002 110 + 1 UCAUGAAAGAGAAUAUUCAUUCAUUUGC---UGUCCACCAGUGGACCAAUAUCGAUUUUCCACCAGUGGAAAAUAUCGAUGGAAAUUGAUCAUCAAAUCAUUUCGAGCAACUU ..(((((.(((....))).)))))((((---((((((....)))))...(((((((((((((....))))))..)))))))(((((.(((......)))))))).)))))... ( -29.80) >DroEre_CAF1 2009 92 + 1 UCAUCAAAGAGAAUAUUCAUUCAUUUGC---UGUUCACCAGUGGACUA------------------UCGAAAAUAUCGGUCGAAAUCGAUCAUCAAAUCAUUUCAAGCAACUU ..........((((....))))..((((---((((((....)))))..------------------...........(((((....)))))..............)))))... ( -16.00) >DroYak_CAF1 2036 92 + 1 UCAUCAAAGAGAAUACUCAUUCAUUUGC---UGUCCACCAGUGGACUA------------------UCGAAAAUAUCGACGGAAAUCGAUCAUCAAAUCAUUUUCAGCAACUU ........(((....)))......((((---((((((....)))))..------------------((((.....)))).((((((.(((......))))))))))))))... ( -19.70) >consensus UCAUCAAAGAGAAUAUUCAUUCAUUUGC___UGUCCACCAGUGGACUA__________________UCGAAAAUAUCGAUGGAAAUCGAUCAUCAAAUCAUUUCGAGCAACUU ..........((((....))))..((((....(((((....)))))......................((....((((((....))))))..))............))))... (-12.88 = -13.38 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:28 2006