Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,388,444 – 8,388,539 |
Length | 95 |
Max. P | 0.529096 |
Location | 8,388,444 – 8,388,539 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 72.05 |
Mean single sequence MFE | -23.90 |
Consensus MFE | -18.65 |
Energy contribution | -18.68 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.10 |
Mean z-score | -0.23 |
Structure conservation index | 0.78 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529096 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8388444 95 + 22224390 ----------AGGUAUAGCCAGCCAAAGUUUUGAUGGUGUCGAGCGAUGGCGACAGACGUUGUGCUUUACCGAUUGACUGCCCCUUUUCUUUCUUUUUGCCA---CCA ----------.((((.((((.((((..((((.(((...)))))))..))))(((....)))).))).))))...............................---... ( -18.50) >DroSec_CAF1 17131 98 + 1 ----------AGGUAUAGCCAGCCAAAGUUUCGAUGGUGUCGAGCGAUGGCGACAGGCGUCGUGCUUUACCGCUUGACUGCCCUUUUCUUUUUCCAUUUCCAUUUCCA ----------.((((..(((.((((..(((.((((...)))))))..))))....)))((((.((......)).)))))))).......................... ( -25.10) >DroSim_CAF1 13458 82 + 1 --------------------------AGUUUCGAUGGUGUCGAGCGAUGGCGACAGACGUCGUGCUUUACCGCUUGACUGCCCUUUUCCUUUUCCAUUUCCAUUUCCA --------------------------.........(((((((((((.(((((((....)))))....)).)))))))).))).......................... ( -20.10) >DroEre_CAF1 18338 82 + 1 --------AACGGUAUA----GCCAAAGUUUUGAUGGUGUCGAGCGAUGGCGACAGACGUCGUGCUUUACCGCUUGACUGCCCUUCUUCCA--CCA------------ --------...((((..----((((.........))))((((((((.(((((((....)))))....)).)))))))))))).........--...------------ ( -22.90) >DroYak_CAF1 17487 102 + 1 UAAAGGUAAGCGGUAUA----GCCCAAGUUUCGAUGGUGUCGAGCGAUGGCGACAGACGUCGUGCUUUACCGCUUGGCUGCCCACUUUCCA--CCAUUCUGGUAUCCU ...((.(((((((((.(----((.......(((((...)))))((((((........))))))))).))))))))).))...........(--((.....)))..... ( -32.90) >consensus __________AGGUAUA____GCCAAAGUUUCGAUGGUGUCGAGCGAUGGCGACAGACGUCGUGCUUUACCGCUUGACUGCCCUUUUUCUUU_CCAUUUCCAU_UCCA ...........(((.......)))...........(((((((((((.(((((((....)))))....)).)))))))).))).......................... (-18.65 = -18.68 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:27 2006