Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,383,686 – 8,383,790 |
Length | 104 |
Max. P | 0.522542 |
Location | 8,383,686 – 8,383,790 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.45 |
Mean single sequence MFE | -27.14 |
Consensus MFE | -16.09 |
Energy contribution | -17.13 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.07 |
Mean z-score | -1.63 |
Structure conservation index | 0.59 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522542 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8383686 104 - 22224390 CAUAUUAGCCU-UCAAUUUCGAUAGCAACAAC-----GUGUUCCGCCCA-AGGGGCAUCCCCCAAAUUA---------ACGUUUGCCAUCCCGCUUGCACAUAAAUCGAUGGCGAAGGAA .......((..-((......))..))......-----...((((.....-.((((....))))......---------...(((((((((.................))))))))))))) ( -23.73) >DroSec_CAF1 12500 104 - 1 CAUAUUAGCCC-CCAAUUUCGAUAGCAACAAC-----GUUUUCCGCCCA-AGGGGCAUCCCCCAAAUUA---------ACGCUUGCCAUCUCGCUUGCACACAAAUCGAUGGCGAAGGAA .......((((-(.......((.(((......-----))).))......-.))))).............---------....((((((((....(((....)))...))))))))..... ( -22.94) >DroEre_CAF1 13720 106 - 1 CAUAUUAGCCCCCCAAUUUCGAUAGCAACAAC-----GUUUUCCGCCCAAAGGGGCAUCCCCCAAAUUU---------ACUCUUGCCAUCUCUCUUGCACAUAAAUCGAUGGCGAAGGAA .......(((((........((.(((......-----))).))........))))).............---------.(..((((((((.................))))))))..).. ( -24.02) >DroYak_CAF1 12587 103 - 1 CAUAUUAGCCC-CCAAUUUCGAUGGCAAGAGC-----GUUUUCCGCCCA-AGGGGCAUCC-CCAAAUUC---------ACGCUUGCCAUCCCUCUCGCACACAAAUCGAUGGCGCAGGAU ...........-........(((((((((.((-----(.....)))...-.((((...))-))......---------...)))))))))(((..(((.((........))))).))).. ( -29.20) >DroAna_CAF1 24150 114 - 1 CUUGUUGGCUC-CAAAGGCCAAAGGGAGCCACUGAAUUCUGGCCGCCCA-AGGGGCAUCCCCCAAAAUACAUAUGGAGACUGUAGCUAUCUCCUUUGCACACAAAUCGAUGG----GCAA ((..((((((.-....))))))..)).((((........)))).(((((-.((((....))))......((...(((((.........)))))..))............)))----)).. ( -35.80) >consensus CAUAUUAGCCC_CCAAUUUCGAUAGCAACAAC_____GUUUUCCGCCCA_AGGGGCAUCCCCCAAAUUA_________ACGCUUGCCAUCUCGCUUGCACACAAAUCGAUGGCGAAGGAA .........................................(((((((....))))..........................((((((((.................)))))))).))). (-16.09 = -17.13 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:26 2006