Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,381,863 – 8,381,962 |
Length | 99 |
Max. P | 0.967500 |
Location | 8,381,863 – 8,381,962 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 74.00 |
Mean single sequence MFE | -15.62 |
Consensus MFE | -8.88 |
Energy contribution | -10.16 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.11 |
Mean z-score | -2.09 |
Structure conservation index | 0.57 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967500 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8381863 99 + 22224390 GGGAAAAAAAAAAGGGAAAACAAAAUGUUGGGAAAAACUGCAACUGAAC---AAUUCGGUUCUUAAGUAGUCCGAUUAAAAUCCGGAAAUUGCAACCCCA-AA------------ (((..........(......).....((((.((....((((....((((---......))))....))))((((.........))))..)).))))))).-..------------ ( -18.60) >DroSec_CAF1 10732 91 + 1 GGGAAAA-------GGCAAACAAAAUGUAGGGAAAAACUGCAACUGAAC---AAUUCAGU-CUUAAGUAGUCCGAUUAAAAUCCGGAAAUUGCAACCCCA-AA------------ (((....-------.((((((....(((((.......)))))(((((..---...)))))-.....))..((((.........))))..))))...))).-..------------ ( -20.40) >DroEre_CAF1 11962 93 + 1 GGGAAAA-------GGCAAACAGAAUAAAGGGAAAAACUGCAACUGAAC---AAUUUAGUUCUUAAGUAGUCCGAUUAAAAUCCGGAAAUUGCAACCCCAAAA------------ (((....-------.((((..................((((....((((---......))))....))))((((.........))))..))))...)))....------------ ( -18.90) >DroYak_CAF1 10772 81 + 1 ------------------UACAAAAUCAAGGGAAAAACUGCAACUGAAC---AAUUCAGUUCUUAAGUAGUCCGAUUAAAAUCCCGAAAUUGCAACCCCA-AA------------ ------------------...........(((....(((((....((((---......))))....))))).(((((..........)))))....))).-..------------ ( -12.40) >DroAna_CAF1 22198 103 + 1 ---AAAAUAUAAA--------GGAAUAAUAAUAAAAACUGCAACUGAACAACAAUUCAAUCGUUAAGUAGUCCGAUUAAAAUCCGAAUCUUUCAACCCCA-AAAACCAAAAAAGA ---..........--------(((....((((....((((((((((((......))))...)))..)))))...))))...)))................-.............. ( -7.80) >consensus GGGAAAA_______GG_AAACAAAAUAAAGGGAAAAACUGCAACUGAAC___AAUUCAGUUCUUAAGUAGUCCGAUUAAAAUCCGGAAAUUGCAACCCCA_AA____________ .............................(((.....(((((((((((......))))))).....))))((((.........)))).........)))................ ( -8.88 = -10.16 + 1.28)
Location | 8,381,863 – 8,381,962 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 74.00 |
Mean single sequence MFE | -17.76 |
Consensus MFE | -11.38 |
Energy contribution | -11.82 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.24 |
Mean z-score | -1.36 |
Structure conservation index | 0.64 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.510257 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8381863 99 - 22224390 ------------UU-UGGGGUUGCAAUUUCCGGAUUUUAAUCGGACUACUUAAGAACCGAAUU---GUUCAGUUGCAGUUUUUCCCAACAUUUUGUUUUCCCUUUUUUUUUUCCC ------------.(-((((((((((((((((((.......)))))........((((......---))))))))))))....))))))........................... ( -19.60) >DroSec_CAF1 10732 91 - 1 ------------UU-UGGGGUUGCAAUUUCCGGAUUUUAAUCGGACUACUUAAG-ACUGAAUU---GUUCAGUUGCAGUUUUUCCCUACAUUUUGUUUGCC-------UUUUCCC ------------..-(((((((((....(((((.......)))))........(-(((((...---..)))))))))).....))))).............-------....... ( -17.60) >DroEre_CAF1 11962 93 - 1 ------------UUUUGGGGUUGCAAUUUCCGGAUUUUAAUCGGACUACUUAAGAACUAAAUU---GUUCAGUUGCAGUUUUUCCCUUUAUUCUGUUUGCC-------UUUUCCC ------------....(((((((((((((((((.......)))))........((((......---))))))))))))....))))...............-------....... ( -18.80) >DroYak_CAF1 10772 81 - 1 ------------UU-UGGGGUUGCAAUUUCGGGAUUUUAAUCGGACUACUUAAGAACUGAAUU---GUUCAGUUGCAGUUUUUCCCUUGAUUUUGUA------------------ ------------..-.((((((((((((((((........)))))........((((......---)))).)))))))....))))...........------------------ ( -16.70) >DroAna_CAF1 22198 103 - 1 UCUUUUUUGGUUUU-UGGGGUUGAAAGAUUCGGAUUUUAAUCGGACUACUUAACGAUUGAAUUGUUGUUCAGUUGCAGUUUUUAUUAUUAUUCC--------UUUAUAUUUU--- ..............-..(((((....)))))(((...((((..((..(((...(((((((((....))))))))).)))..))...)))).)))--------..........--- ( -16.10) >consensus ____________UU_UGGGGUUGCAAUUUCCGGAUUUUAAUCGGACUACUUAAGAACUGAAUU___GUUCAGUUGCAGUUUUUCCCUUCAUUUUGUUU_CC_______UUUUCCC ................((((((((....(((((.......))))).........((((((((....))))))))))))....))))............................. (-11.38 = -11.82 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:25 2006