Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,377,165 – 8,377,271 |
Length | 106 |
Max. P | 0.961516 |
Location | 8,377,165 – 8,377,271 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 69.75 |
Mean single sequence MFE | -33.11 |
Consensus MFE | -18.67 |
Energy contribution | -19.33 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.26 |
Mean z-score | -1.88 |
Structure conservation index | 0.56 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961516 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8377165 106 + 22224390 AGAGCCAAACGACCAAAAUGUGGCGGCAGUCAACGAUACUGGCCGCGUUACUAGUGGCU---CUUUUGUGUGCGGGCAGUGCAGAAAGCAA-AGGUAAGCGAUCAAAAUC .((((((.........((((((((..((((.......)))))))))))).....)))))---)(((((..(((..((..(((.....))).-..))..)))..))))).. ( -32.74) >DroPse_CAF1 6500 100 + 1 GGAGCGGC---UCGAAAAUGCGGCGGCAGUCAACGAUGCUGGCCGCGAUAUUGCUAGCUGCCUUUUU------GGGCAGUGCAA-CUGCAAGAAGUAAGUCCACAGCAAC ((((((((---(((......)))(((((........))))))))))....(((((.(((((((....------)))))))((..-..))....))))).)))........ ( -35.70) >DroGri_CAF1 5548 90 + 1 A-----CAGCAACUCAAAUGAGGCGGCAGUCAAUGAUGCUGGCCGCGAUAUUACUGGCUGCCAUUUU------GGGCAGCGCAA-CGGCAACGAGUAAGUAU-------- .-----......(((....)))((((((((.......))).)))))....(((((.((((((.....------.))))))....-((....)))))))....-------- ( -32.10) >DroWil_CAF1 5481 92 + 1 -----------AACAAAAUGCGGCGGCAGUCAACAAUGCUGGCCGCGAUAUUAAUUGCUGCCAUUUU------UGGCAGUGCAA-CGGCAAUGAGUAAGUUAAUUAACUU -----------.......((((((((((........)))).))))))..((((((((((((((....------)))))))((..-..))........)))))))...... ( -29.40) >DroYak_CAF1 5931 106 + 1 AGAGCCAAACGACCAAAAUGUGGCGGCAGUCAACGAUACUGGCCGCGUUAUUAGUGGCU---CUUUUGUGUGCGGGCAGUGCAGAAAGCAA-AGGUAAGCCAUCAAAAUC .((((((.........((((((((..((((.......)))))))))))).....)))))---)(((((((.((..((..(((.....))).-..))..)))).))))).. ( -33.04) >DroPer_CAF1 8967 100 + 1 GGAGCGGC---UCGAAAAUGCGGCGGCAGUCAACGAUGCUGGCCGCGAUAUUGCUAGCUGCCUUUUU------GGGCAGUGCAA-CUGCAAGAAGUAAGUCCACAGCAAC ((((((((---(((......)))(((((........))))))))))....(((((.(((((((....------)))))))((..-..))....))))).)))........ ( -35.70) >consensus AGAGC_AA___ACCAAAAUGCGGCGGCAGUCAACGAUGCUGGCCGCGAUAUUACUGGCUGCCAUUUU______GGGCAGUGCAA_CAGCAA_AAGUAAGUCAACAAAAUC ..................((((((((((........)))).)))))).((((....(((((((..........)))))))((.....))....))))............. (-18.67 = -19.33 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:24 2006