Locus 3151

Sequence ID X_DroMel_CAF1
Location 8,368,708 – 8,368,823
Length 115
Max. P 0.594190
window5164

overview

Window 4

Location 8,368,708 – 8,368,823
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.34
Mean single sequence MFE -15.41
Consensus MFE -10.04
Energy contribution -10.04
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.94
Structure conservation index 0.65
SVM decision value 0.12
SVM RNA-class probability 0.594190
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8368708 115 - 22224390
UUUUAACCCACUAAA-AAAGUAAACUUUUCCGCAAUCAAUCAAUCACGCAAACACAAAUUUCCCCCGCACCGCGCUCUCCCACAACGAGCAU--UUCCACCGCGUGCGGAAAAUUCAA--
...............-.........((((((((............((((.................((...))((((.........))))..--.......)))))))))))).....-- ( -18.80)
>DroSec_CAF1 33835 111 - 1
UUUUAACCCACUAAAAAAAGUAAACUUUUCCGCAAUCAAUCAAUCACGCAAACACAAAUUUCC-CCGCACCUCU---CCCCUCGUCGAG-UU--UUCCACCGCGUGCGGAAAAUUCAA--
.........................(((((((((.............((..............-..))......---.....((.((.(-(.--....))))))))))))))).....-- ( -13.59)
>DroSim_CAF1 37046 111 - 1
UUUUAACCCACUAAAAAAAGUAAACUUUUCCGCAAUCAAUCAAUCACGCAAACACAAAUUUCC-CCGCACCGCU---UCCCUCGUCGGA-UU--UUCCACCGCGUGCGGAAAAUUCAA--
.........................(((((((((.............((..............-..))......---.....((.(((.-..--.....)))))))))))))).....-- ( -16.19)
>DroEre_CAF1 30498 99 - 1
UUUUAACCCACUAAA--AAGUAAACUUUUCCGCAAUCAAUCAAUCACGCAAACACAAAUUUCC--CC------------CCUCAUCGAG-UU--UUCCACCGCGUGCGGAAAAUUCAA--
...............--........((((((((............((((......((((((..--..------------.......)))-))--)......)))))))))))).....-- ( -12.00)
>DroYak_CAF1 32868 103 - 1
UUUUAACCCACUAAA--AAGUGAAGUUUUCCGCAAUCAAUCAAUCACGCAAACACAAUUUCCC--CG------------CCUCGCCGAC-UUUUUUCCACCGCGUGCGGAAAAUUCAAAA
........((((...--.)))).(((((((((((.............((..............--.)------------)..(((.(..-.........).))))))))))))))..... ( -16.46)
>consensus
UUUUAACCCACUAAA_AAAGUAAACUUUUCCGCAAUCAAUCAAUCACGCAAACACAAAUUUCC_CCGCACC_C_____CCCUCGUCGAG_UU__UUCCACCGCGUGCGGAAAAUUCAA__
.........................((((((((............((((....................................................))))))))))))....... (-10.04 = -10.04 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:19 2006