Locus 3148

Sequence ID X_DroMel_CAF1
Location 8,367,287 – 8,367,404
Length 117
Max. P 0.804047
window5155

overview

Window 5

Location 8,367,287 – 8,367,404
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 87.54
Mean single sequence MFE -33.79
Consensus MFE -23.17
Energy contribution -23.41
Covariance contribution 0.24
Combinations/Pair 1.21
Mean z-score -2.42
Structure conservation index 0.69
SVM decision value 0.63
SVM RNA-class probability 0.804047
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8367287 117 + 22224390
CACUCACCGCCAACUUCUUGUUUG-CAUUUU-CACCAUUUUCACCAUUUUCCAUGCCCAAUGGGGCUACUUGGGGACCCUCUUGUCAUUUGGGUUAAAUGCGAGCAGGCGUAGAAA-AAG
...((..((((.......((((((-(((((.-..(((............((((.((((....))))....))))(((......)))...)))...)))))))))))))))..))..-... ( -34.91)
>DroSec_CAF1 32451 108 + 1
CACUCACCGCCAACUUCUUGUUCG-CAUUUU-CCUCAU---------UUUCCAUGCCCAAUGGGGCUACUUGG-GACCCUCUUGUCAUUUGGGUUAAAUGCGAGCAGGCGUAGAAAAAAG
...((..((((.......((((((-(((((.-.((((.---------...(((.((((....))))....)))-(((......)))...))))..)))))))))))))))..))...... ( -37.61)
>DroSim_CAF1 35642 116 + 1
CACUCACCGCCAACUUCUUGUGCG-CAUUUU-CCCCAUUUUCACCAUUUUCCAUGCCCAAUGGGGCUACUUGG-GACCCUCUUGUCAUUUGGGUUAAAUGCGAGCAGGCGUAGAAA-AAG
...((..((((.......(((.((-(((((.-.((((.............(((.((((....))))....)))-(((......)))...))))..))))))).)))))))..))..-... ( -36.51)
>DroEre_CAF1 29187 117 + 1
CAGCCAGCGCCAACUUCUUUUUUUGCAUUUU-CCCCAUUUUCACCAUUUUUCAUGCCCAAUGGGGCUACUUG--GACCCUCUUGUCAUUUGGGUUAAAUGUGAAGAGGCGUAGAAAAAGG
......(((((........((((..(((((.-.((((.................((((....))))......--(((......)))...))))..)))))..)))))))))......... ( -31.70)
>DroYak_CAF1 31387 117 + 1
CACUCGCCGCCAACUUCUUUUACC-CAUUUUCCCCCAUUUUCAGCAUUUUCCAUGCCCAAUGGGGCUACUUG--GACCCUCUUGUCAUUUGGGUUAAAUGUGUGCAGGCUUAGGAAAAAG
.....(((((((.....(((.(((-((.....(((((((....((((.....))))..))))))).......--(((......)))...))))).)))..)).)).)))........... ( -28.20)
>consensus
CACUCACCGCCAACUUCUUGUUCG_CAUUUU_CCCCAUUUUCACCAUUUUCCAUGCCCAAUGGGGCUACUUGG_GACCCUCUUGUCAUUUGGGUUAAAUGCGAGCAGGCGUAGAAAAAAG
...((..((((.......((((((.(((((...((((.................((((....))))........(((......)))...))))..)))))))))))))))..))...... (-23.17 = -23.41 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:12 2006