Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,359,429 – 8,359,521 |
Length | 92 |
Max. P | 0.799702 |
Location | 8,359,429 – 8,359,521 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 77.58 |
Mean single sequence MFE | -21.13 |
Consensus MFE | -17.38 |
Energy contribution | -17.63 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.11 |
Mean z-score | -1.13 |
Structure conservation index | 0.82 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.799702 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8359429 92 + 22224390 CCUCGGCCAUGUUCACGGCCACCUCGUCGUGCUUUGUGCUGGGUAGGAUUGCACCUGCGACUU-UUCCAUUCCA-UACACUCUCAAU--UAUAUUA .((((((((....((((((......))))))...)).))))))..(((((((....))))...-.)))......-............--....... ( -21.80) >DroVir_CAF1 3915 88 + 1 CAUCGGCCAUGUUUACGGCGACCUCGUCGUGUUUUGUCCUGGGUAAGCUUAA-CAUGCUGAGU---CCAUAUCG-UUGCC---UUGUUUAACAUAU ....(((.(((..(((((((....)))))))........((((..(((....-...)))...)---)))...))-).)))---............. ( -20.90) >DroSec_CAF1 24615 91 + 1 CCUCGGCCAUGUUCACGGCCACGUCGUCGUGCUUUGUGCUGGGUAGGAUUGCACCUGCUACUUUUUCCAUGCCA-UUCCCUCUAUAU---AUAUC- ...((((((....((((((......))))))...)).))))(((((((..((....)).......))).)))).-............---.....- ( -21.30) >DroSim_CAF1 27821 92 + 1 CCUCGGCCAUGUUCACGGCCACCUCGUCGUGCUUUGUGCUGGGUAGGAUUGCACCUGCUACUU-UUCCAUUCCA-CUCCCUCUAUAU--UAUAUCA ...((((((....((((((......))))))...)).))))((((((......))))))....-..........-............--....... ( -20.70) >DroEre_CAF1 21801 91 + 1 CCUCGGCCAUGUUCACGGCCACCUCGUCGUGCUUUGUGCUGGGUAGGAUUGCACCUGCUACAU-UUCCAUUCCACUAUA-UAUUUAC---UUAUUA ...((((((....((((((......))))))...)).))))((((((......))))))....-...............-.......---...... ( -20.70) >DroYak_CAF1 23458 85 + 1 CCUCGGCCAUGUUCACGGCCACCUCGUCGUGCUUUGUGCUGGGUAGGAUUGCACUUGCUACCA-UGGCA------UAUU-UAUUUAC---UUAUUA .....((((((...(((((......)))))((...((((...........))))..))...))-)))).------....-.......---...... ( -21.40) >consensus CCUCGGCCAUGUUCACGGCCACCUCGUCGUGCUUUGUGCUGGGUAGGAUUGCACCUGCUACUU_UUCCAUUCCA_UACCCUCUUUAU___AUAUUA ...((((((....((((((......))))))...)).))))((((((......))))))..................................... (-17.38 = -17.63 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:53 2006