Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 994,950 – 995,042 |
Length | 92 |
Max. P | 0.874950 |
Location | 994,950 – 995,042 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 90.26 |
Mean single sequence MFE | -24.83 |
Consensus MFE | -23.41 |
Energy contribution | -23.41 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.86 |
Structure conservation index | 0.94 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.874950 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 994950 92 + 22224390 CAGGAGAGCAACACGACCCCGCCCACUUUCCACUUUCCACCUUUCCUUUCCAACCCACCUGAAAAGCUUGAGGGGCGUAGAAGCGUGUUGCU ......(((((((((.(..(((((.(((....((((.((....................)).))))...))))))))..)...))))))))) ( -26.15) >DroSec_CAF1 77506 83 + 1 CAGGAGAGCAACACGACCCCGCCCACUUUCCACC---------CCCUUUCCAACCCACCUGAAAAGCUUGAGGGGCGUAGAAACGUGUUGCU ......(((((((((.(..(((((.(((......---------..((((.((.......)).))))...))))))))..)...))))))))) ( -24.30) >DroSim_CAF1 57006 83 + 1 CAGGAGAGCAACACGACCCCGCCCACUUUCCACC---------CCCUUUCCAACCCACCUGAAAACCUUGAGGGGCGUAGAAGCGUGUUGCU ......(((((((((.(..(((((.(((......---------..........................))))))))..)...))))))))) ( -24.05) >consensus CAGGAGAGCAACACGACCCCGCCCACUUUCCACC_________CCCUUUCCAACCCACCUGAAAAGCUUGAGGGGCGUAGAAGCGUGUUGCU ......(((((((((.(..(((((.(((.........................................))))))))..)...))))))))) (-23.41 = -23.41 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:30 2006