Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,358,554 – 8,358,645 |
Length | 91 |
Max. P | 0.616918 |
Location | 8,358,554 – 8,358,645 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.49 |
Mean single sequence MFE | -20.17 |
Consensus MFE | -5.77 |
Energy contribution | -5.57 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.38 |
Mean z-score | -1.71 |
Structure conservation index | 0.29 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616918 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8358554 91 + 22224390 ACUU-------UAUGGCUUUGCCUCAUCAAU---AAUCCUGUGCGAUGAAGCCACGUGAUAAAAUUAGAAAU--------------CAGCUAUAAGUAC-----GCAUUACACUUAAACA ..((-------((((((...((.(((((.((---(....)))..))))).))....((((..........))--------------))))))))))...-----................ ( -14.50) >DroSec_CAF1 23765 90 + 1 ACUU-------UAUGGCU-UGCUUCAUCAAU---AAUCCUGUGCGAUGAAGCCGCGUGAUAAAAUUAGAAAU--------------CAGCCAUAAGUAC-----GCAAAAUACUUAAACA ..((-------((((((.-.((((((((.((---(....)))..))))))))....((((..........))--------------))))))))))...-----................ ( -20.90) >DroSim_CAF1 26960 98 + 1 ACUUUAUACUUUAUGGCUUUGCUUCAUCAAU---AAUCCUGUGCGAUGAAGCCGCGUGAUAAAAUUAGAAAU--------------CAGCCAUAAGUAC-----GCAUAAUACUUAAACA ......(((((.(((((...((((((((.((---(....)))..))))))))....((((..........))--------------)))))))))))).-----................ ( -22.20) >DroEre_CAF1 20900 107 + 1 UCGU-------UAUGGCUUUGCUUCAUAAAA---AAUCCUGUGCGGCGA---CACGUGAUAAUAUUCGAAAUCAGCUCUAAGCUCUGAGUAAUCAGUACUCCAAGCAUAAUGCUAUAAUA ..((-------((((((.(((((.((((...---.....)))).)))))---......................(((...((..((((....))))..))...))).....)))))))). ( -24.50) >DroYak_CAF1 22535 105 + 1 UCUU-------UAUGGCUUUGCUUCAUAAAUAAUAAUCCUGUGCGAUGG---CACAUGAUAGAAUUCGAAAUUAUAAAUUAGAAAUCAGCUACAAGUAC-----GCAUAAUACUUUAGCA ..((-------(((((.......))))))).....(((.(((((....)---)))).))).((.(((..............))).)).((((.(((((.-----......))))))))). ( -18.74) >consensus ACUU_______UAUGGCUUUGCUUCAUCAAU___AAUCCUGUGCGAUGAAGCCACGUGAUAAAAUUAGAAAU______________CAGCCAUAAGUAC_____GCAUAAUACUUAAACA ...........(((((((.(((....................)))(((......)))..............................))))))).......................... ( -5.77 = -5.57 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:52 2006