Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,354,670 – 8,354,768 |
Length | 98 |
Max. P | 0.512497 |
Location | 8,354,670 – 8,354,768 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 80.70 |
Mean single sequence MFE | -17.67 |
Consensus MFE | -14.73 |
Energy contribution | -14.48 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.17 |
Mean z-score | -1.08 |
Structure conservation index | 0.83 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512497 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8354670 98 + 22224390 GUUGUUAUUGUUGCCUUGCAGCCAUAUCAACGGUCCGGUGACUAAGCUCAACCUCUCAACCUC------GACCUCAGCCUCAGUCCUUCUACCUA-----CUACCUACU--------- ((((.(((.(((((...))))).))).))))(((..((.((((..(((.....((........------))....)))...))))))...)))..-----.........--------- ( -18.10) >DroSec_CAF1 20112 92 + 1 GUUGUUAUUGUUGCCUUGCAGCCAUAUCAACGGUCCGGUGACUAAGCUCAACCUCUCAACCUC------GACCUCAGCCUCAGUCCUUUUACCUA-----CUA--------------- ((((.(((.(((((...))))).))).))))(((..((.((((..(((.....((........------))....)))...))))))...)))..-----...--------------- ( -18.10) >DroSim_CAF1 23238 98 + 1 GUUGUUAUUGUUGCCUUGCAGCCAUAUCAACGGUCCGGUGACUAAGCUCAACCUCUCAACCUC------GACCUCAGCCUCAGUCCUUCUACCUA-----CUACCUACU--------- ((((.(((.(((((...))))).))).))))(((..((.((((..(((.....((........------))....)))...))))))...)))..-----.........--------- ( -18.10) >DroEre_CAF1 17167 100 + 1 GUUGUUAUUGUUGCCUUGCAGCCAUAUCAACGGUCCGGUGACUAAGCUCAACCUCUCAACCUCGACCUCGACCUCAGCCUCAGUCCUUCUACCUA-----CUACC------------- ((((.(((.(((((...))))).))).))))(((..((.((((..(((.............(((....)))....)))...))))))...)))..-----.....------------- ( -18.03) >DroYak_CAF1 18386 113 + 1 GUUGUUAUUGUUGCCUUGCAGCCAUAUCAACGGUCCGGUGACUAAGCUCAACCUCUCAACCUCGACCUCGACCUCAGCCUCAGUCCUUUUACCUA-----CUACCUACUACCCACAAC ((((.(((.(((((...))))).))).))))(((..((.((((..(((.............(((....)))....)))...))))))...)))..-----.................. ( -18.03) >DroAna_CAF1 6217 99 + 1 GUUGUUGUUGUUGCUUUACAGCCAUAUCAACGGUCCGGUGACUAAGCCCAGCCUAU------------------CAGCCUCAGCCCUUCUACCUCUGUAACCCCCAAAAAACCAGAA- ((((.(((.((((.....)))).))).))))(((..(((......)))..)))...------------------...................((((...............)))).- ( -15.66) >consensus GUUGUUAUUGUUGCCUUGCAGCCAUAUCAACGGUCCGGUGACUAAGCUCAACCUCUCAACCUC______GACCUCAGCCUCAGUCCUUCUACCUA_____CUACCUACU_________ ((((.(((.(((((...))))).))).))))(((..(((......)))..)))................................................................. (-14.73 = -14.48 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:47 2006