Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,348,991 – 8,349,096 |
Length | 105 |
Max. P | 0.739304 |
Location | 8,348,991 – 8,349,096 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 86.18 |
Mean single sequence MFE | -32.98 |
Consensus MFE | -22.74 |
Energy contribution | -23.86 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.07 |
Mean z-score | -2.08 |
Structure conservation index | 0.69 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.739304 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8348991 105 + 22224390 UAAUGAGCUUCGUUGGGUCCUCCAAUCUGAUUUCUAGCGAGCCAGUUAGCUACUGCUGCCAUUCACUCGAUUU--GGUUUCGCUAACUUGGCCGGCUGCAGAUUGCA ....(((..((....))..)))(((((((.....((((..((((((((((.......((((.((....))..)--)))...)))))).))))..))))))))))).. ( -30.50) >DroSec_CAF1 14415 104 + 1 UAAUGGGCUUCGUUGGGG-CUCCAGUCUGAUUUCUAGCCAGCCAGUUAGCUACUGCUGCCGUUCACUCGAUUU--GGUUUCGCUAACUUGGCCGGCUGCAGAUUGCA ....((((((.....)))-)))(((((((.....(((((.((((((((((.......((((.((....))..)--)))...)))))).)))).)))))))))))).. ( -38.10) >DroSim_CAF1 17387 104 + 1 UAAUGAGCUUCGUUGGGG-CUCCAAUCUGAUUUCUAGCCAGCCAGUUAGCUACUGCUGCCGUUCACUCGAUUU--GGUUUCGCUAACUUGGCCGGCUGCAGAUUGCA ....((((((.....)))-)))(((((((.....(((((.((((((((((.......((((.((....))..)--)))...)))))).)))).)))))))))))).. ( -39.00) >DroEre_CAF1 11560 101 + 1 UAAUGAGCUUUGGUCGGA-CGCGAAUCUGACUUCUAGCCACCCAGUGAGCUACU---GCCAUUCACUUGAUUU--GGUUUUGCUAACUUGGCCGGCUGCAGAUUGCA ......((((((((((((-......))))))...(((((.((.(((.(((....---((((.((....))..)--)))...))).))).))..)))))))))..)). ( -29.60) >DroYak_CAF1 12236 93 + 1 UAAUGAGCUUG-----------CAAUCUGAUUUCUAGCUAACCAGUGAGCUACU---GCCAUUCACUCGAUUUCAGUUUUCGCUAACUUGGCCGGCUGCAGAUUGCA .........((-----------(((((((....(..(((((..((((((..(((---(....((....))...)))).))))))...)))))..)...))))))))) ( -27.70) >consensus UAAUGAGCUUCGUUGGGG_CUCCAAUCUGAUUUCUAGCCAGCCAGUUAGCUACUGCUGCCAUUCACUCGAUUU__GGUUUCGCUAACUUGGCCGGCUGCAGAUUGCA ......................(((((((.....(((((.((((((((((.(((........((....)).....)))...)))))).)))).)))))))))))).. (-22.74 = -23.86 + 1.12)
Location | 8,348,991 – 8,349,096 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 86.18 |
Mean single sequence MFE | -29.83 |
Consensus MFE | -23.54 |
Energy contribution | -24.42 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.11 |
Mean z-score | -1.66 |
Structure conservation index | 0.79 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687236 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8348991 105 - 22224390 UGCAAUCUGCAGCCGGCCAAGUUAGCGAAACC--AAAUCGAGUGAAUGGCAGCAGUAGCUAACUGGCUCGCUAGAAAUCAGAUUGGAGGACCCAACGAAGCUCAUUA ..(((((((((((.(((((.((((((....((--(..((....)).)))........))))))))))).))).)....)))))))(((............))).... ( -27.10) >DroSec_CAF1 14415 104 - 1 UGCAAUCUGCAGCCGGCCAAGUUAGCGAAACC--AAAUCGAGUGAACGGCAGCAGUAGCUAACUGGCUGGCUAGAAAUCAGACUGGAG-CCCCAACGAAGCCCAUUA .((.....))(((((((((.((((((......--...(((......)))........)))))))))))))))...........(((.(-(.........)))))... ( -30.63) >DroSim_CAF1 17387 104 - 1 UGCAAUCUGCAGCCGGCCAAGUUAGCGAAACC--AAAUCGAGUGAACGGCAGCAGUAGCUAACUGGCUGGCUAGAAAUCAGAUUGGAG-CCCCAACGAAGCUCAUUA ..(((((((((((((((((.((((((......--...(((......)))........))))))))))))))).)....)))))))(((-(.........)))).... ( -36.83) >DroEre_CAF1 11560 101 - 1 UGCAAUCUGCAGCCGGCCAAGUUAGCAAAACC--AAAUCAAGUGAAUGGC---AGUAGCUCACUGGGUGGCUAGAAGUCAGAUUCGCG-UCCGACCAAAGCUCAUUA .((((((((((((((.(((.((.(((....((--(..((....)).))).---....))).))))).)))))....).)))))).)).-.................. ( -25.60) >DroYak_CAF1 12236 93 - 1 UGCAAUCUGCAGCCGGCCAAGUUAGCGAAAACUGAAAUCGAGUGAAUGGC---AGUAGCUCACUGGUUAGCUAGAAAUCAGAUUG-----------CAAGCUCAUUA (((((((((((((..((((.((.(((....((((..((.......))..)---))).))).))))))..))).)....)))))))-----------))......... ( -29.00) >consensus UGCAAUCUGCAGCCGGCCAAGUUAGCGAAACC__AAAUCGAGUGAAUGGCAGCAGUAGCUAACUGGCUGGCUAGAAAUCAGAUUGGAG_CCCCAACGAAGCUCAUUA ..(((((((((((((((((.((((((............((......))((....)).))))))))))))))).)....)))))))...................... (-23.54 = -24.42 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:44 2006