Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,347,007 – 8,347,098 |
Length | 91 |
Max. P | 0.858051 |
Location | 8,347,007 – 8,347,098 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 62.20 |
Mean single sequence MFE | -23.14 |
Consensus MFE | -9.73 |
Energy contribution | -10.85 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.15 |
Mean z-score | -2.19 |
Structure conservation index | 0.42 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.858051 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8347007 91 + 22224390 GUUAGCUGAUCUUCAGCUAGUUCCUUUGGCAUCAUAAGGAUAAUCUUGAUCCCAAC-----UUUAUACUGUAAGAUUAUCUUUCAUCUUCGCUA--GA---------------------- .(((((((.....)))))))....((((((.....(((((((((((((........-----.........))))))))))))).......))))--))---------------------- ( -22.03) >DroSim_CAF1 15358 96 + 1 GUUAGCUGAUCUUCAGCUAGUUCCUUUGGCAUCAUCAGGAUAAGCUUGGUACCAACUUAACUUCAGACUGUAAGAUUAUCUUUCAUCUUCGUUA--GA---------------------- (..((.((((((((((((((((...((((....((((((.....)))))).))))...))))..)).))).))))))).))..)..........--..---------------------- ( -19.40) >DroYak_CAF1 10058 120 + 1 GCUAGAGUUUCUACAGCUAGUUGCAUUUGCAUUCGCAGGAUAAUCCUGAUCUUAAGUUUACUUUAGAGCGUGAGAUCAUCUUCCAUCUAAUCCAACUCUAUUUGAGAUCCUCUUCCAUUU (..((((..(((.(((..(((((.((((((....)))(((......((((((((.((((......)))).))))))))...)))....))).)))))....))))))..))))..).... ( -28.00) >consensus GUUAGCUGAUCUUCAGCUAGUUCCUUUGGCAUCAUCAGGAUAAUCUUGAUCCCAACUU_ACUUUAGACUGUAAGAUUAUCUUUCAUCUUCGCUA__GA______________________ .((((((((...))))))))................((((((((((((......................))))))))))))...................................... ( -9.73 = -10.85 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:41 2006