Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,343,373 – 8,343,466 |
Length | 93 |
Max. P | 0.900729 |
Location | 8,343,373 – 8,343,466 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 92.35 |
Mean single sequence MFE | -26.44 |
Consensus MFE | -21.94 |
Energy contribution | -22.54 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.70 |
Structure conservation index | 0.83 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.900729 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8343373 93 - 22224390 ACAACACUCGUAGGCCAAAGAUAAUGACAGUUAUCAAUACUGUACUGUUUGGGUCACCUGAAUAGGUUCUUUGACUCCGCCUGACCAUGAGUG ....(((((((((((((((((.....(((((.......))))).(((((..((...))..)))))..)))))).....))))....))))))) ( -28.80) >DroSec_CAF1 8896 93 - 1 ACAACACUCGUAGGCCAAAGAUAAUGGCGGUUAUCAACACUGUACUGUUUGGGUCACCUGAAUAGGUUCUUUGACUCCGCCUGACCAUGAGUG ....(((((((.((.((........(((((...((((.......(((((..((...))..))))).....))))..))))))).))))))))) ( -28.90) >DroSim_CAF1 11055 93 - 1 ACAACACUCGUAGGCCAAAGAUAAUGGCGGUUAUCAACACUGUACUGUUUGGGUCACCUGAAUAGGUUCUUUGACUCCGCCUGACCAUGAGUG ....(((((((.((.((........(((((...((((.......(((((..((...))..))))).....))))..))))))).))))))))) ( -28.90) >DroEre_CAF1 5799 88 - 1 ACAACACUCGUAGGCCAAAGAUAAUCGCAGUUAUCAA-----GACUGUUUGGGUCACCUGAAUAGGUUCUUUGACUCCGCCUGACCAUGAGUG ....(((((((((((...........((((((.....-----))))))..((((((...(((....)))..)))).))))))....))))))) ( -25.00) >DroYak_CAF1 6372 91 - 1 ACAACAAACGUAGGCCAACGAUAAUCGCAGUUAUCAGGA--GGACUGUUUGGGUCACCUGAAUAGGUUCUUUGACUCCACCUGACCAUGAGUG ....((..(((.((.(...((((((....))))))(((.--((((((((..((...))..)))))(((....)))))).)))).)))))..)) ( -20.60) >consensus ACAACACUCGUAGGCCAAAGAUAAUGGCAGUUAUCAACACUGUACUGUUUGGGUCACCUGAAUAGGUUCUUUGACUCCGCCUGACCAUGAGUG ....(((((((((((....((((((....)))))).........(((((..((...))..))))).............))))....))))))) (-21.94 = -22.54 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:40 2006