Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,334,944 – 8,335,055 |
Length | 111 |
Max. P | 0.659081 |
Location | 8,334,944 – 8,335,055 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 83.11 |
Mean single sequence MFE | -26.60 |
Consensus MFE | -17.29 |
Energy contribution | -19.60 |
Covariance contribution | 2.31 |
Combinations/Pair | 1.09 |
Mean z-score | -1.81 |
Structure conservation index | 0.65 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.659081 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8334944 111 + 22224390 UAUGAUAUACUUGAAAUAUAUUGCUG----AGCGGUUAAAAAACUCCUGUUAUCGCCGUCUAUCGAUGACACCGAUAGCGGCAUCAUCUGUUCCGUGUCAUCCCCAAAAGUUUCU ...((...((((.........(((.(----(((((......(((....)))...((((.((((((.......)))))))))).....)))))).)))..........)))).)). ( -25.31) >DroSec_CAF1 7053 106 + 1 UACUAAACAUUUGAAAUAUAUUGCCGAAUUAGCGGUUAGAAAACUCCUGUUAUCGCCGUCUAUCG---------AUAGCGGCAUCAUCUGUUCCGUGUCAUCCCCAAAAGUUUCG ............(((((...(((..((....((((.((((......(((((((((........))---------))))))).....))))..))))....))..)))..))))). ( -21.70) >DroEre_CAF1 7565 112 + 1 UAG---GCAUUUAAAAAGUAUUGCUGAAUUAGCGGCCAGAAAACUCCUGUUAUCGCCGUUAAUCGAUGACACCGAUAGCAGCAUCAUCUGUUCCGUGUCAUCCCCAAAAGUUUCA ..(---(((............))))((.((((((((..((.(((....))).))))))))))))((((((((.((..((((......)))))).))))))))............. ( -31.30) >DroYak_CAF1 7483 112 + 1 CAC---ACAUUUGAAAUGUAUUGCUGAAUUAGCGGCCAGAAAACUCCUGUUAUCGCCGCCAAUCGAUGACACCGAUAGCAUCAUCAUCUGUUCCGUGUCAUCCCCAAAAGUUUCA ...---.....((((((...(((..((.((.(((((..((.(((....))).))))))).))))((((((((.((..(((........))))).))))))))..)))..)))))) ( -28.10) >consensus UAC___ACAUUUGAAAUAUAUUGCUGAAUUAGCGGCCAGAAAACUCCUGUUAUCGCCGUCAAUCGAUGACACCGAUAGCAGCAUCAUCUGUUCCGUGUCAUCCCCAAAAGUUUCA ............(((((...(((........(((((..((.(((....))).))))))).....((((((((.((..((((......)))))).))))))))..)))..))))). (-17.29 = -19.60 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:30 2006