Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,331,029 – 8,331,121 |
Length | 92 |
Max. P | 0.574807 |
Location | 8,331,029 – 8,331,121 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 81.58 |
Mean single sequence MFE | -28.55 |
Consensus MFE | -19.40 |
Energy contribution | -19.57 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.36 |
Mean z-score | -1.47 |
Structure conservation index | 0.68 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574807 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8331029 92 + 22224390 GUAGAAUAUCGGUGGCGGUGGCGGCGGUUGGAGCAACCUCGGCGGUGUUAUCAGGUGAUGAUGCGGCGAUGGAG---UAGUAUAGAAACUAAACU ..........(((((((.((.(((.(((((...)))))))).)).))))))).(((....((((.((......)---).))))....)))..... ( -25.30) >DroSec_CAF1 3181 92 + 1 GAAGAAUAUCGGCUGCGGUGGCGGCGGUUGGAGCAGCCUCGGCGGCGUUAUCAGAUGAUGAUGCGGCGAUGGAG---UAGUGUAGAAACUAAACU ......((((((((((..((((....))))..))))))...((.((((((((....)))))))).))))))...---((((......)))).... ( -33.50) >DroSim_CAF1 2032 92 + 1 GAAGAAUAUCGGCUGCGGUGGCGGCGGUUGGAGCAGCCUCGGCGGCGUGAUCAGAUGAUGAUGCGGCGAUGGAG---UAGUGUAGAAACUAAACU ......((((((((((..((((....))))..))))))...((.((((.(((....))).)))).))))))...---((((......)))).... ( -31.60) >DroEre_CAF1 3599 92 + 1 GAAAAAUAUCGGUGGCGGUGGCGGCGGUUGGAGCAGCCUAGGCGGCGACAUCAUGUGAUGAUGCGGCGAUGGAG---AAGUGUAGAAGCUAAACU ......((((.((.((....)).))(((((...)))))...((.(((.((((....)))).))).))))))...---.(((......)))..... ( -23.50) >DroYak_CAF1 3579 92 + 1 GAAGAAUAUCGGGGGCGGUGGCGGAGGUUGGAGAAGCCUCGGUGGCGACAUCAUGUGAUGGUGCGGCGAUGGAG---AAGUGUAGAAACUGAACU ...........((..((((..(.((((((.....)))))).((.(((.((((....)))).))).)).......---.......)..))))..)) ( -26.30) >DroAna_CAF1 4559 86 + 1 AUAGAAUAUGG---------GCGGCGGCUGGAGCAGCCUGGGCGGCGACAUCAGGUGAUGUGGCGGUGGUGGCGGCGGCGUCAGGAAGUUGAACU .........(.---------.((((..(((..((.(((...((.((.(((((....))))).)).))...)))....))..)))...))))..). ( -31.10) >consensus GAAGAAUAUCGGCGGCGGUGGCGGCGGUUGGAGCAGCCUCGGCGGCGACAUCAGGUGAUGAUGCGGCGAUGGAG___UAGUGUAGAAACUAAACU ......((((...........(((.(((((...))))))))((.((((((((....)))))))).))))))........................ (-19.40 = -19.57 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:29 2006