Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,328,435 – 8,328,535 |
Length | 100 |
Max. P | 0.813635 |
Location | 8,328,435 – 8,328,535 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.08 |
Mean single sequence MFE | -25.64 |
Consensus MFE | -12.95 |
Energy contribution | -14.28 |
Covariance contribution | 1.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.92 |
Structure conservation index | 0.51 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.813635 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8328435 100 + 22224390 AUCGACCAA---------CGCCCAUGCCUACGCCCACGCCCACUCAUGCACACCCC-----AAUACCACCC----ACUCACCC--AUUCAACGGCCCAGGAGGGGCGUGGCACUCAGGUU ...((((..---------.((....))....(((.((((((.(((..((.......-----..........----........--........))....)))))))))))).....)))) ( -24.31) >DroSec_CAF1 585 100 + 1 AUCGACCAA---------CGCCCAUGCCUACGCCCACGCCCACUCAUGCACACCCC-----AAUACCACCC----ACCCACCC--AUUCAAUGGCCAAGGAGGGGCGUGGCACUCAUGUU .......((---------((....((((.((((((..((........)).......-----..........----.((...((--((...))))....))..))))))))))....)))) ( -22.50) >DroSim_CAF1 564 100 + 1 AUCGACUAA---------CGCCCAUGCCUACGCCCACGCCCACUCAUGCACACCCC-----AAUACCACCC----ACCCACCC--AUUCAACGGCCCAGGAGGGGCGUGGCACUCAGGUU .........---------.......((((....((((((((.(((..((.......-----..........----........--........))....))))))))))).....)))). ( -23.21) >DroEre_CAF1 985 92 + 1 AUCGUUCAA---------CGCCCAUGC------CCACGCCCACACAUGCACACCCCAUA------CCACCC----ACCCACCC--AUUUAACGGCUAAGG-GGGGCCUGGCAUUCAGGUU .........---------.(((.((((------(...((((....(((.......))).------......----.(((..((--.......))....))-)))))..)))))...))). ( -19.80) >DroYak_CAF1 1024 109 + 1 AUCGACCAA---------CGCCCAUGCCUACGCCCACGCCCACUCAUGCACACCCACUUCCACCACCACCCACCAACCAACCC--AUUCAACGGCCCAGGAGGGGCGUGGCACUCAGGUC ...((((..---------.((....))....(((.((((((.(((..((..................................--........))....)))))))))))).....)))) ( -25.65) >DroAna_CAF1 1025 102 + 1 AUCGCCUGAGAAGACCACCGCCCCCCC------ACCAGCCCCAACAUCCACCCACC-----AA-ACAGUCC----ACCCGCCCACAGUCCAUGGCU--GGCGGGGCGUGGUUCUCAGGUU ...((((((((..(((((.(((((...------.((((((................-----..-.......----.................))))--)).)))))))))))))))))). ( -38.35) >consensus AUCGACCAA_________CGCCCAUGCCUACGCCCACGCCCACUCAUGCACACCCC_____AAUACCACCC____ACCCACCC__AUUCAACGGCCCAGGAGGGGCGUGGCACUCAGGUU .................................((((((((.(((..((............................................))....))))))))))).......... (-12.95 = -14.28 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:28 2006