Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,327,492 – 8,327,582 |
Length | 90 |
Max. P | 0.945526 |
Location | 8,327,492 – 8,327,582 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 59.65 |
Mean single sequence MFE | -44.90 |
Consensus MFE | -18.55 |
Energy contribution | -19.95 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.69 |
Mean z-score | -2.04 |
Structure conservation index | 0.41 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.945526 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8327492 90 + 22224390 GGUGCUGAUGCCGCUUCAGCGGCCGCAGCAGCUGCCGGCGGUGCCGGUGG---------AGCUGGUGGCGAGU------ACGGUGGUGCUAACGCCGGUGCUGGU (.(((((..(((((....)))))..))))).).(((((((.((((((...---------..)))))(((((((------((....)))))..))))).))))))) ( -47.20) >DroPse_CAF1 85 84 + 1 GGCGCCGAUG------CAUCGGCCGGAGCAUCUGCUGGCGGUGCCGCCAG---------CAGUGGCGGCGAGU------ACACCAUUAGCAAUGGCGGAUCUGGA (.((((((((------(..(....)..)))))((((((((....))))))---------))..)))).)((..------.(.((((.....)))).)..)).... ( -38.60) >DroGri_CAF1 106 87 + 1 ---------GGCGAUGCAGCAGCCGCUGCAUCCGCUGGCGGUGCUGGUGAUUUCGGCAAUGCUGGUGGUUUGG------GCGAUGGUUCA---GCCGCCGCUUCC ---------(((((((((((....))))))))(((..(((.((((((.....)))))).)))..))).....(------((((....)).---))))))...... ( -42.70) >DroEre_CAF1 73 78 + 1 GGUGCUGAAGC------------CGCAGCUGCUGCCGGCGGUGCCGGCGG---------AGCUGGUGGCGAGU------UCGGUGGUGCUGGCGCCGGUGCUGGU ...((((((((------------(((((((.((((((((...))))))))---------)))).)))))...)------)))))((..(((....)))..))... ( -42.90) >DroWil_CAF1 70 93 + 1 GGCGCCGAUGCCGCUUCGGCAGCUGCCGCUGCUGCUGGCCA---AGGUGG---------UCAGGGUGGCGAGUAUGGACAUGGUGGUGCUGGUGCCGGCGCCGGC (((((((..(((((....)).((..((((..((.((((((.---....))---------))))))..))..((....))..))..))...)))..)))))))... ( -51.30) >DroYak_CAF1 73 90 + 1 GGCGCUGAUGCCGCCUCAGCGGCCGCGGCUGCUGCCGGUGGUGCCGGUGG---------AGCUGGUGGCGAGU------AUGGUGGUGCCAAUGCCGGUGCUGGU ((((.((..((((((...((.(((((((((.(..((((.....))))..)---------)))).)))))..))------..))))))..)).))))......... ( -46.70) >consensus GGCGCUGAUGCCGCUUCAGCGGCCGCAGCAGCUGCCGGCGGUGCCGGUGG_________AGCUGGUGGCGAGU______ACGGUGGUGCUAAUGCCGGUGCUGGU ((((((...............((((((((..((((((((...))))))))..........))).)))))...............((((....))))))))))... (-18.55 = -19.95 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:25 2006