Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 991,390 – 991,487 |
Length | 97 |
Max. P | 0.541482 |
Location | 991,390 – 991,487 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 89.55 |
Mean single sequence MFE | -22.35 |
Consensus MFE | -18.40 |
Energy contribution | -19.28 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.09 |
Mean z-score | -1.40 |
Structure conservation index | 0.82 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541482 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 991390 97 + 22224390 AUUGAUCGUCGAGAUAAAAAAUGAUUAUAAACAUUCACCAACACACGAGCGCGCUCGAAAGAGAGAGCGAUAAUAAGCACGUGAAAACGGAGCCU-------CC ..(((((((...........)))))))...................((((((.(((....)))...))).......((.(((....)))..))))-------). ( -20.40) >DroSec_CAF1 73950 97 + 1 AUCGAUCGUUGAGAUAAAAAAUUAUUAUAAACAUUCACCAACACACGCGCGCGCUCGAAAGAGAGAGCGAUAGUAAGCACGUGAAAACGGUGCCU-------CC ...((..(((..(((((....)))))...)))..))........((.(((.(.(((....))).).)))...))..((((((....)).))))..-------.. ( -22.00) >DroSim_CAF1 53266 97 + 1 AUCGAUCGUUGAGAUAAAAAAUGAUUAUAAACAUUCACCAACACACGCGCGCGCUCGAAGGAGAGAGCGAUAGUAAGCACGUGAAAACGGUGCCU-------CC ...(((((((.........))))))).........((((....((((.((.(((((........))))).......)).)))).....))))...-------.. ( -23.50) >DroYak_CAF1 79812 104 + 1 AUCGAUCGUUAAGAUAAAAAACAAUCAUAAACAUUCACCAACACACGCGCGCGCUCGAAAGAGAGAGCGAUAGUGAGCACGUGAAAACGGAGCCUAUUGCCUAU .....(((((..(((........))).......(((((...(.(((.(((.(.(((....))).).)))...))).)...)))))))))).............. ( -23.50) >consensus AUCGAUCGUUGAGAUAAAAAAUGAUUAUAAACAUUCACCAACACACGCGCGCGCUCGAAAGAGAGAGCGAUAGUAAGCACGUGAAAACGGAGCCU_______CC ...(((((((.........))))))).........((((....((((.((.(((((........))))).......)).)))).....))))............ (-18.40 = -19.28 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:27 2006