Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,325,448 – 8,325,543 |
Length | 95 |
Max. P | 0.655415 |
Location | 8,325,448 – 8,325,543 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 77.76 |
Mean single sequence MFE | -40.75 |
Consensus MFE | -28.99 |
Energy contribution | -29.80 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.27 |
Mean z-score | -1.12 |
Structure conservation index | 0.71 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.655415 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8325448 95 - 22224390 ----G------AGCA-CCUUAGUAGUUGGGCUGGCCAUAGGGCGCGGGGCUGUUGUACAGUGGAGCCUCGUUGCCGUAGGCAUUGCCAUCGGCAGAGGAGGCGGCA ----.------.((.-((((.((.....(((..(((.((.(((((((((((.(........).))))))).)))).)))))...)))....)).))))..)).... ( -41.60) >DroVir_CAF1 17930 97 - 1 ----GCA----UCU-GGCUUAGUAGCUGGGGGAGCCAUAGGGAGCUGGGCUGGCGUAGAGGGGGGUUUCAGCGCCGGCGGCAUAGCUAUCGGAACUGGGACCGGAG ----...----(((-((((((((..(((..((.(((.(((....))).((((((((.((((....)))).)))))))))))....))..))).)))))).))))). ( -40.60) >DroSec_CAF1 18707 95 - 1 ----G------ACCA-ACUUAGUAGCUGGGCUGGCCAUAGGGCGCGGGGCUGUUGUACAGUGGAGCCUCGUUGCCGUAGGCAUUGCCAUCGGCAGAGGAGGCGGCA ----(------.((.-.(((..(.(((((((..(((.((.(((((((((((.(........).))))))).)))).)))))...)))..)))).)..)))..))). ( -41.10) >DroSim_CAF1 18856 95 - 1 ----G------ACCA-ACUUAGUAGCUGGGCUGGCCAUAGGGCGCGGGGCUGUUGUACAGUGGAGCCUCGUUGCCGUAGGCAUUGCCAUCGGCAGAGGAGGCGGCG ----(------.((.-.(((..(.(((((((..(((.((.(((((((((((.(........).))))))).)))).)))))...)))..)))).)..)))..))). ( -41.10) >DroEre_CAF1 17291 99 - 1 ----G-ACCUGACCA--CCUAGUAGUUGGGCUGGCCGUAGGGCGCGGGGCUGUUGUACAGUGGGGCCUCGUUGCCGUAGGCAUUGCCAUCGGCGGAGGAGGCGCUA ----.-.((((..((--(((((...))))).))(((....))).))))((((.....))))((.(((((.((((((..(((...)))..))))))..))))).)). ( -40.50) >DroAna_CAF1 18247 99 - 1 CCACA------ACCC-ACUUAGUAGUUGGGCUGACCGUAAGGGGCGGGACUGGCGUACAGAGGAGCCUCGUUGCCGGCGGAGUAGCCAUCGGCGGAGGAGGCGGCU .....------..((-.(((.(((((..(.(((.((....))..)))..)..)).))).)))..(((((.((((((..((.....))..))))))..))))))).. ( -39.60) >consensus ____G______ACCA_ACUUAGUAGCUGGGCUGGCCAUAGGGCGCGGGGCUGUUGUACAGUGGAGCCUCGUUGCCGUAGGCAUUGCCAUCGGCAGAGGAGGCGGCA ............(((....((((((((..((..(((....)))))..)))))))).....))).(((((.((((((..(((...)))..))))))..))))).... (-28.99 = -29.80 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:23 2006