Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,316,285 – 8,316,377 |
Length | 92 |
Max. P | 0.966392 |
Location | 8,316,285 – 8,316,377 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 64.05 |
Mean single sequence MFE | -20.48 |
Consensus MFE | -11.71 |
Energy contribution | -12.03 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.12 |
Mean z-score | -1.65 |
Structure conservation index | 0.57 |
SVM decision value | 1.59 |
SVM RNA-class probability | 0.966392 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8316285 92 - 22224390 AAAAAUCUUUCUAGGAAGCACUCUUAAGCUUUUGUAAUCACUGCACACUAAGCAGUGUUGAUCAGUUCGUUCGAAAGCUUAUCCU-UG--------------------------UUUUU .............(((((((....((((((((((.(((((((((.......))))))..((.....)))))))))))))))....-))--------------------------))))) ( -23.00) >DroSim_CAF1 9844 85 - 1 CAAAAUCUUCCUAGUAAGCACUCUUAAGCUUUUGUAAUCACUGU--ACUAAGCAGUGUUGAUCAGUUCGUUAGGAAGCUUAUCCU--------------------------------UU ......((((((((..(((........((....))...((((((--.....)))))).......)))..))))))))........--------------------------------.. ( -19.70) >DroEre_CAF1 8151 83 - 1 CUA------------AAUCACCAUUAAACUUUUGAAAUCACUGU--ACCAAGCAGUGUUGAUCAGUUCGUAAGAAAGCUUAUUCAUUG----------------------UUAAUCUUU ...------------...........(((...((((..((((((--.....))))))........(((....)))......))))..)----------------------))....... ( -12.40) >DroYak_CAF1 7758 117 - 1 GGAAAGUUGCUUAGAAAACAUUGCUUAGCUUUUGUAAUCACUGU--ACUAAGCAGUGCUGAUCAGCGCGUUAGGAAGCUUAUCCUGUGAACUCGAGUUUAUGAACUUUGUAUAAUCUUU ((((((((.(((((.......(((((((.....((....))...--.)))))))(((((....))))).))))).))))).))).((((((....)))))).................. ( -26.80) >consensus CAAAAUCUUCCUAG_AAGCACUCUUAAGCUUUUGUAAUCACUGU__ACUAAGCAGUGUUGAUCAGUUCGUUAGAAAGCUUAUCCU_UG__________________________UCUUU ........................(((((((((.....((((((.......))))))..((.....))....)))))))))...................................... (-11.71 = -12.03 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:22 2006