Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,312,194 – 8,312,301 |
Length | 107 |
Max. P | 0.597046 |
Location | 8,312,194 – 8,312,301 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 75.94 |
Mean single sequence MFE | -19.47 |
Consensus MFE | -10.80 |
Energy contribution | -10.92 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -1.91 |
Structure conservation index | 0.55 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.597046 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8312194 107 + 22224390 CUCCAUUUA----UAAUUCCUGAUUGCUUUUUACAAUAUUUCAUUUGUAAU-UUGAUUAGGAAAGCUUUAGCAACAUUUUGAGCAACUUAUGGCUUUUUAAAUUACUUUUCU------ ..((((...----...((((((((((....((((((........)))))).-.)))))))))).((((............)))).....))))...................------ ( -17.90) >DroSim_CAF1 5705 113 + 1 CUCCAUUUACAUAUAAUUCCUGAUUGUUUUUUAAAAUAUUUCAU----AGG-UUGAUUAGGAAAGCUUUAGCAACAUUUUGAGCAACUUAUGGCUUUGAAAAAUACUUUUCUAUAUGU ........(((((((......((.(((((((((((.....((((----(((-(((.((((((..((....))....)))))).)))))))))).))))))))))).))...))))))) ( -21.80) >DroEre_CAF1 3782 101 + 1 CUCCAUUUC----GAAUUCCUGAUUGCCUUUUACAUUAUUUCUU----AUUUCUGAUUGGGAAAGCU-UAGCAACAUUUUGAGCAACUUAUGGCAAUGAA--------UUUUAUAUUU .........----((((((...((((((..........((((((----(........)))))))(((-(((.......)))))).......)))))))))--------)))....... ( -18.70) >consensus CUCCAUUUA____UAAUUCCUGAUUGCUUUUUACAAUAUUUCAU____AAU_UUGAUUAGGAAAGCUUUAGCAACAUUUUGAGCAACUUAUGGCUUUGAAAA_UACUUUUCUAUAU_U ..((((..........(((((((((.............................))))))))).((((............)))).....))))......................... (-10.80 = -10.92 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:21 2006