Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,309,623 – 8,309,715 |
Length | 92 |
Max. P | 0.655025 |
Location | 8,309,623 – 8,309,715 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 74.38 |
Mean single sequence MFE | -23.17 |
Consensus MFE | -8.02 |
Energy contribution | -8.39 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.07 |
Mean z-score | -2.18 |
Structure conservation index | 0.35 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.655025 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8309623 92 - 22224390 UGCUUACGCUCCUGGUCAUAAAAAUAAAAGCAC---CAAGCUUUAGUCAGCUGUGCAAAAGCUGCCGGA--GAAUCAGGUAAAAG-CCAAAGCGAGUU .((((..((((((((((.........(((((..---...))))).(.(((((.......))))).)...--).))))))....))-)..))))..... ( -23.40) >DroSec_CAF1 2799 83 - 1 CAACUACGCUCCUGAUCAUAAAAAUAAAAGCAC---CAAGCUUUAGUCAGCUGUGCAAAAGCUGCCA-----AAUCAGGUAAAA-------GCGAGUU .((((.((((((((((..........(((((..---...))))).(.(((((.......))))).).-----.))))))....)-------))))))) ( -24.10) >DroSim_CAF1 2774 83 - 1 CGCCUACGCUCCUGGUCAUAAAAAUAAAAGCAC---CAAGCUUUAGUCAGCUGUGCAAAAGCUGCCA-----AAUCAGGUAAAA-------GCGAGUU ......((((((((((..........(((((..---...))))).(.(((((.......))))).).-----.))))))....)-------))).... ( -21.50) >DroEre_CAF1 3001 86 - 1 UGCUUACGCUCCUGUACCUUAAAA------AACGCCUAAGCUUUAGACAGCUGUGAAAAAGCUGUCG-----AAUCAGGUAAAAG-CCAAAGCGAGUU .((((..(((....(((((.....------...((....))....(((((((.......))))))).-----....)))))..))-)..))))..... ( -23.70) >DroYak_CAF1 2844 83 - 1 CGCCUACGCUCCUGGCCAUGAAAA------CAC---CAAGCUUUAGUCAGCUGUGAAAAAGCUGCCA-----AAUCAGGUAAAAG-CCAAAGCGAGUU ......((((..((((........------(((---..((((......))))))).......((((.-----.....))))...)-))).)))).... ( -19.70) >DroAna_CAF1 2915 90 - 1 CACCGCCGUCACUGGCCAGAGGGAA-----AGG---GGAGCUUUGGUCAGCUGUGCAAAAGCUGCCAAAACGAAGCAGGUAACAGGCGAGAGAGAGUU ...((((((((((((((((((....-----...---....)))))))))).)).)).....((((.........))))......)))).......... ( -26.60) >consensus CGCCUACGCUCCUGGUCAUAAAAAU_____CAC___CAAGCUUUAGUCAGCUGUGCAAAAGCUGCCA_____AAUCAGGUAAAAG_CCAAAGCGAGUU ......(((.((((.........................((....))(((((.......)))))...........))))............))).... ( -8.02 = -8.39 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:19 2006